Gene/Protein Characteristic Table for KIAA1177
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Product ID ORK07375
Accession No AB033003
Description XPA binding protein 2
Clone name hf00837a
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (2330 bp)
Predicted protein sequence (755 aa)
Source Human adult brain
Rouge ID mKIAA1177 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence

Length: 2330 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 60 bp
Genome contig ID gi42406306r_7490472
PolyA signal sequence
Flanking genome sequence
(99940 - 99891)

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class
Ensembl gnome browser 19 r 7590412 7598639 17 100.0 Perfect prediction
Features of the protein sequence

Length: 755 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q9HCS7 0 100.0 Pre-mRNA-splici...
Homo sapiens
BAB15807 0 99.9 XAB2 [Homo sapi...
Homo sapiens
AAQ14304 0 99.9 crn-related pro...
Homo sapiens
Q99PK0 0 99.1 Pre-mRNA-splici...
Rattus norvegicus
Q9DCD2 0 99.1 Pre-mRNA-splici...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR013105 156 189 PF07719 Tetratricopeptide TPR_2
HMMSmart IPR003107 24 58 SM00386 RNA-processing protein
IPR013026 156 189 SM00028 Tetratricopeptide region
IPR003107 170 205 SM00386 RNA-processing protein
IPR013026 295 328 SM00028 Tetratricopeptide region
IPR003107 309 345 SM00386 RNA-processing protein
IPR013026 333 366 SM00028 Tetratricopeptide region
IPR003107 347 396 SM00386 RNA-processing protein
IPR003107 398 430 SM00386 RNA-processing protein
IPR003107 432 466 SM00386 RNA-processing protein
IPR003107 471 505 SM00386 RNA-processing protein
IPR003107 507 541 SM00386 RNA-processing protein
IPR003107 579 613 SM00386 RNA-processing protein
ProfileScan IPR013026 10 43 PS50005 Tetratricopeptide region
IPR013026 156 189 PS50005 Tetratricopeptide region
IPR013026 156 189 PS50293 Tetratricopeptide region
IPR013026 295 328 PS50005 Tetratricopeptide region
IPR013026 295 366 PS50293 Tetratricopeptide region
IPR013026 333 366 PS50005 Tetratricopeptide region
IPR013026 384 451 PS50293 Tetratricopeptide region
Expression profile

Experimental conditions
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information

Chromosome No. 19
Experimental conditions
Panel name GeneBridge 4
PCR product length 194 bp
PCR conditions 95 °C15 sec66 °C60 sec30 cycles
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