ROUGE

Gene/Protein Characteristic Table for mKIAA0956

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK129248
Description :
Clone Name :	mpm12246 [Vector Info]
Source :	Mouse embryonic tail

Features of the cloned DNA sequence	Description

Length: 4854 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1088 bp

Genome contig ID gi65492966f_35107827
PolyA signal sequence
(AATAAA,-20)
+----*----+----*----+----*----+----
TAAACCAACCTTCAGAATAAAGGACTTTTGTTAAG
Flanking genome sequence
(201941 - 201990)
----+----*----+----*----+----*----+----*----+----*
AACCCTGTTGTTGCATGTTATCTAATTGAAGGTAGACTGCCACAATACAG

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0956 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0956	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 134..3766
Length: 1210 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
XP_342229	96.9	similar to ATPa...	Rattus norvegicus
AAH76603	100.0	ATPase, class V...	Mus musculus
XP_001067830	96.1	similar to ATPa...	Rattus norvegicus
Q9Y2G3	93.4	Probable phosph...	Homo sapiens
EAW78345	92.8	ATPase, Class V...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK173088	3.4e-209	58.6	mKIAA1021
AK220560	6.3e-81	38.2	mKIAA4233
AK089064	6.5e-52	30.6	mKIAA0611
AK173107	2.6e-45	36.5	mKIAA1137
AK220352	1.1e-41	37.0	mKIAA0715

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR005834 436 876 PF00702 Haloacid dehalogenase-like hydrolase

HMMTigr IPR006539 74 1141 TIGR01652 Phospholipid-translocating P-type ATPase

IPR001757 123 225 TIGR01494 ATPase

IPR001757 368 461 TIGR01494 ATPase

IPR001757 707 757 TIGR01494 ATPase

IPR001757 825 933 TIGR01494 ATPase

ScanRegExp IPR001757 442 448 PS00154 ATPase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR005834	436	876	PF00702	Haloacid dehalogenase-like hydrolase
HMMTigr	IPR006539	74	1141	TIGR01652	Phospholipid-translocating P-type ATPase
IPR001757	123	225	TIGR01494	ATPase
IPR001757	368	461	TIGR01494	ATPase
IPR001757	707	757	TIGR01494	ATPase
IPR001757	825	933	TIGR01494	ATPase
ScanRegExp	IPR001757	442	448	PS00154	ATPase

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 101 122 VANFYFLIIFLVQLMIDTPTSP

125 147 SGLPLFFVITVTAIKQGYEDWLR

321 343 MNTFLIIYLIILISEAIISTILK

371 393 LRFISDFLAFLVLYNFIIPISLY

909 931 IATLVQYFFYKNVCFITPQFLYQ

944 966 SVYLTLYNICFTSLPVLIYSLVE

990 1012 LSIKAFLYWTVLGFSHAFIFFFG

1024 1046 LGNGQMFGNWTFGTLVFTVMVIT

1066 1088 TWGSIIFYFIFSLFYGGILWPFL

1099 1121 QLLSSGSAWFAILLMVVTCLFID

Method	From	To	amino acid sequence
SOSUI	101	122	VANFYFLIIFLVQLMIDTPTSP
125	147	SGLPLFFVITVTAIKQGYEDWLR
321	343	MNTFLIIYLIILISEAIISTILK
371	393	LRFISDFLAFLVLYNFIIPISLY
909	931	IATLVQYFFYKNVCFITPQFLYQ
944	966	SVYLTLYNICFTSLPVLIYSLVE
990	1012	LSIKAFLYWTVLGFSHAFIFFFG
1024	1046	LGNGQMFGNWTFGTLVFTVMVIT
1066	1088	TWGSIIFYFIFSLFYGGILWPFL
1099	1121	QLLSSGSAWFAILLMVVTCLFID

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	1088 bp
Genome contig ID	gi65492966f_35107827
PolyA signal sequence (AATAAA,-20)	+--------+--------+----*----+---- TAAACCAACCTTCAGAATAAAGGACTTTTGTTAAG
Flanking genome sequence (201941 - 201990)	----+--------+--------+--------+--------+----* AACCCTGTTGTTGCATGTTATCTAATTGAAGGTAGACTGCCACAATACAG

Gene/Protein Characteristic Table for mKIAA0956

Features of the cloned DNA sequence

Features of the protein sequence