ROUGE

Gene/Protein Characteristic Table for mKIAA0611

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK089064
Description :	Potential phospholipid-transporting ATPase IIA.
Clone Name :	mbh02036 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 3699 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 330 bp

Genome contig ID gi66880554r_168043175
PolyA signal sequence
(GATAAA,-18)
+----*----+----*----+----*----+----
TGAACCTCTTGTCATGTGATAAAAGTCTCTGTCTC
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
GAAGGTTGCAGGCTTTTCATTTTTAATCAGTCTTGTCACAGGTGCGTTCT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0611 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
KIAA0611	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 88..3369
Length: 1093 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
BAC40730	100.0	unnamed protein...	Mus musculus
NP_056546	97.8	ATPase, class I...	Mus musculus
CAM15666	95.2	ATPase, class I...	Mus musculus
AAH75718	95.2	Atp9a protein [...	Mus musculus
AAH94551	97.7	ATPase, class I...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK220560	4.2e-49	30.8	mKIAA4233
AK129248	6.4e-49	30.5	mKIAA0956
AK173107	2e-26	30.6	mKIAA1137
AK173088	4.7e-26	31.8	mKIAA1021
AK220352	1.3e-25	30.6	mKIAA0715

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam IPR005834 431 852 PF00702 Haloacid dehalogenase-like hydrolase

HMMTigr IPR006539 99 1093 TIGR01652 Phospholipid-translocating P-type ATPase

IPR001757 149 247 TIGR01494 ATPase

IPR001757 349 456 TIGR01494 ATPase

IPR001757 685 742 TIGR01494 ATPase

IPR001757 802 918 TIGR01494 ATPase

ProfileScan NULL 54 77 PS50311 NULL

ScanRegExp IPR006209 54 66 PS01186 EGF-like

IPR001757 437 443 PS00154 ATPase

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	IPR005834	431	852	PF00702	Haloacid dehalogenase-like hydrolase
HMMTigr	IPR006539	99	1093	TIGR01652	Phospholipid-translocating P-type ATPase
IPR001757	149	247	TIGR01494	ATPase
IPR001757	349	456	TIGR01494	ATPase
IPR001757	685	742	TIGR01494	ATPase
IPR001757	802	918	TIGR01494	ATPase
ProfileScan	NULL	54	77	PS50311	NULL
ScanRegExp	IPR006209	54	66	PS01186	EGF-like
IPR001757	437	443	PS00154	ATPase

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 302 324 NTLWAGTVIASGTVVGVVLYTGR

343 365 DLEVNCLTKILFGALVVVSLVMV

375 397 YLQIIRFLLLFSNIIPISLRVNL

889 911 SQFVIHRSLCISTMQAVFSSVFY

923 945 IIGYSTIYTMFPVFSLVLDKDVK

968 990 KTFLIWVLISIYQGSTIMYGALL

998 1020 HIVAISFTSLILTELLMVALTIQ

1025 1047 LMTVAELLSLACYIASLVFLHEF

1055 1077 TLSFLWKVSVITLVSCLPLYVLK

Method	From	To	amino acid sequence
SOSUI	302	324	NTLWAGTVIASGTVVGVVLYTGR
343	365	DLEVNCLTKILFGALVVVSLVMV
375	397	YLQIIRFLLLFSNIIPISLRVNL
889	911	SQFVIHRSLCISTMQAVFSSVFY
923	945	IIGYSTIYTMFPVFSLVLDKDVK
968	990	KTFLIWVLISIYQGSTIMYGALL
998	1020	HIVAISFTSLILTELLMVALTIQ
1025	1047	LMTVAELLSLACYIASLVFLHEF
1055	1077	TLSFLWKVSVITLVSCLPLYVLK

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	330 bp
Genome contig ID	gi66880554r_168043175
PolyA signal sequence (GATAAA,-18)	+--------+--------+----*----+---- TGAACCTCTTGTCATGTGATAAAAGTCTCTGTCTC
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* GAAGGTTGCAGGCTTTTCATTTTTAATCAGTCTTGTCACAGGTGCGTTCT

Gene/Protein Characteristic Table for mKIAA0611

Features of the cloned DNA sequence

Features of the protein sequence