ROUGE

Gene/Protein Characteristic Table for mKIAA0715

Link to : HUGE \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK220352
Description :
Clone Name :	mbp06183 [Vector Info]
Source :	Mouse brain

Features of the cloned DNA sequence	Description

Length: 2675 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 5 bp

Genome contig ID gi65527427f_42865384
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CGCAGATCTCAGAGTTCACTGACCATATGAGGGAC
Flanking genome sequence
(147362 - 147411)
----+----*----+----*----+----*----+----*----+----*
TACAGAAATCAGAAATGGATCCAAACTCAGAAGAGACCATCCAATCATGA

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

KIAA0715 DNA sequence, AA sequence

KIAA	Alignment based on:
KIAA0715	DNA sequence, AA sequence

Features of the protein sequence	Description

Coding region: 1..2670
Length: 889 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
CAI24454	99.9	ATPase, class V...	Mus musculus
XP_001067759	94.8	similar to Prob...	Rattus norvegicus
XP_220314	94.8	similar to Prob...	Rattus norvegicus
EAW61546	82.5	hCG1979529, iso...	Homo sapiens
O94823	82.5	Probable phosph...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	ROUGE_ID
AK172972	1.5e-119	50.8	mKIAA0566
AK173107	7.4e-52	39.1	mKIAA1137
AK173088	7.7e-47	36.0	mKIAA1021
AK220560	1.4e-35	37.7	mKIAA4233
AK129248	4.3e-32	37.0	mKIAA0956

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMTigr IPR006539 1 746 TIGR01652 Phospholipid-translocating P-type ATPase

IPR001757 295 345 TIGR01494 ATPase

IPR001757 435 546 TIGR01494 ATPase

ScanRegExp IPR006662 681 699 PS00194 Thioredoxin-related

Search method	interpro_ID	From	To	Entry	Definition
HMMTigr	IPR006539	1	746	TIGR01652	Phospholipid-translocating P-type ATPase
IPR001757	295	345	TIGR01494	ATPase
IPR001757	435	546	TIGR01494	ATPase
ScanRegExp	IPR006662	681	699	PS00194	Thioredoxin-related

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 533 555 NVCYVNLLFWYQFFCGFSGSTMI

558 580 WQMIFFNLFFTSLPPIIFGVLDK

606 628 PTFWVSMADAFYQSLICFFIPYL

670 691 VLLGSFLMYFVVSLIYNATCVT

711 733 FYLICLLTPVVALLPRYFLLSLQ

Method	From	To	amino acid sequence
SOSUI	533	555	NVCYVNLLFWYQFFCGFSGSTMI
558	580	WQMIFFNLFFTSLPPIIFGVLDK
606	628	PTFWVSMADAFYQSLICFFIPYL
670	691	VLLGSFLMYFVVSLIYNATCVT
711	733	FYLICLLTPVVALLPRYFLLSLQ

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	5 bp
Genome contig ID	gi65527427f_42865384
PolyA signal sequence (None)	+--------+--------+----*----+---- CGCAGATCTCAGAGTTCACTGACCATATGAGGGAC
Flanking genome sequence (147362 - 147411)	----+--------+--------+--------+--------+----* TACAGAAATCAGAAATGGATCCAAACTCAGAAGAGACCATCCAATCATGA

Gene/Protein Characteristic Table for mKIAA0715

Features of the cloned DNA sequence

Features of the protein sequence