ROUGE

Gene/Protein Characteristic Table for mFLJ00041

Link to : NEDO \| SWISS-PROT/TrEMBL
Features : DNA sequence \| Protein sequence

Accession No. :	AK131118
Description :
Clone Name :	mfj00880 [Vector Info]
Source :	Mouse fetal brain

Features of the cloned DNA sequence	Description

Length: 4759 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 3745 bp

Genome contig ID gi65524842f_60205618
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
CAGCTCTTAACTACTTGAGCTATTTTTCCAACTCC
Flanking genome sequence
(125751 - 125800)
----+----*----+----*----+----*----+----*----+----*
ACCATTGTGTATTTTTAGCATTTATTTTAAAATTTTATGTGCATGTTTTT

Genomic structure deduced by Blast search against draft genome sequences
Comparison with the corresponding KIAA cDNA.

KIAA Alignment based on:

FLJ00041 DNA sequence, AA sequence, Physical map

KIAA	Alignment based on:
FLJ00041	DNA sequence, AA sequence, Physical map

Features of the protein sequence	Description

Coding region: 1..1014
Length: 337 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	Exp	ID%	Protein	Source
BAD21368	7.4e-132	100.0	mFLJ00041 prote...	Mus musculus
Q9D659	5.7e-119	99.7	Platelet recept...	Mus musculus
AAH98723	6.4e-102	86.8	Platelet recept...	Rattus norvegicus
EDL93048	3.5e-101	86.5	rCG22135, isofo...	Rattus norvegicus
BAC27847	1.3e-98	99.2	unnamed protein...	Mus musculus

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other ROUGE database (FASTA output)
No significant homologues
Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

HMMPfam NULL 61 197 PF07686 NULL

HMMSmart IPR003599 68 197 SM00409 Immunoglobulin subtype

ProfileScan IPR007110 75 218 PS50835 Immunoglobulin-like

Search method	interpro_ID	From	To	Entry	Definition
HMMPfam	NULL	61	197	PF07686	NULL
HMMSmart	IPR003599	68	197	SM00409	Immunoglobulin subtype
ProfileScan	IPR007110	75	218	PS50835	Immunoglobulin-like

Prediction of transmembrane (TM) segments

Method From To amino acid sequence

SOSUI 45 67 TLLLAIFLAASRGLVAAFKVTTP

218 240 TAAALATGACIVGILCLPLILLL

Method	From	To	amino acid sequence
SOSUI	45	67	TLLLAIFLAASRGLVAAFKVTTP
218	240	TAAALATGACIVGILCLPLILLL

How to obtain mKIAA clone(s) Back to the ROUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	3745 bp
Genome contig ID	gi65524842f_60205618
PolyA signal sequence (None)	+--------+--------+----*----+---- CAGCTCTTAACTACTTGAGCTATTTTTCCAACTCC
Flanking genome sequence (125751 - 125800)	----+--------+--------+--------+--------+----* ACCATTGTGTATTTTTAGCATTTATTTTAAAATTTTATGTGCATGTTTTT

Gene/Protein Characteristic Table for mFLJ00041

Features of the cloned DNA sequence

Features of the protein sequence