hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
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HMM file:                 /data11/genetics/InterProScan/iprscan/data/smart.HMMs
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00880/w3open/interpro/cnk_1/seq.in
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Query:  mFLJ00041  ( 337 res)   mfj00880

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
IG       Immunoglobulin                                  38.8    7.1e-07   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
IG         1/1      68   197 ..     1    58 []    38.8  7.1e-07

Alignments of top-scoring domains:
IG: domain 1 of 1, from 68 to 197: score 38.8, E = 7.1e-07
                   *->pp.vtvkeGesvtLtC.as...........titWy............
                       + ++  eG+++tLtC++ ++ +++++ + + tWy ++++  +  + 
   mFLJ00041    68    YSlYVCPEGQNATLTCrILgpvskghdvtiYKTWYlssrgevqmcke 114  

                   ............................................LtI.nv
                   +++ ++ + ++ ++++++ + + +++++++++    ++++++ ++t++nv
   mFLJ00041   115 hrpirnftlqhlqhhgshlkanashdqpqkhglelasdhhgnfsITLrNV 164  

                   tpeDsesgGtYtCaat.......sgsasseqgttLtVl<-*
                   tp Ds   G Y C +   +++++    ++  + +L+V+   
   mFLJ00041   165 TPRDS---GLYCCLVIelknhhpEQRFYG--SMELQVQ    197  

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