hmmpfam - search a single seq against HMM database
HMMER 2.1.1 (Dec 1998)
Copyright (C) 1992-1998 Washington University School of Medicine
HMMER is freely distributed under the GNU General Public License (GPL).
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /data11/genetics/InterProScan/iprscan/data/Pfam
Sequence file:            /cdna4/rodent/full/goal/mfj/mfj00880/w3open/interpro/cnk_1/seq.in
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
Query:  mFLJ00041  ( 337 res)   mfj00880

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
V-set    Immunoglobulin V-set domain                     29.7    6.7e-05   1
ig       Immunoglobulin domain                           21.2      0.024   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
ig         1/1      76   176 ..     1    65 []    21.2    0.024
V-set      1/1      61   197 ..     1   130 []    29.7  6.7e-05

Alignments of top-scoring domains:
ig: domain 1 of 1, from 76 to 176: score 21.2, E = 0.024
                   *->GesvtLtCsvs....gfgppdvtvtWlrngk..lt.gvlvtssenng
                      G+ +tLtC+  ++ + ++++ ++ tW+  + ++++   +++  +n +
   mFLJ00041    76    GQNATLTCRILgpvsKGHDVTIYKTWYLSSRgeVQmCKEHRPIRNFT 122  

                   dstyqt.............................sLtitnvtpeDggtY
                    +  q ++++ + + +++++++++ +  ++++++ s t++nvtp D+g Y
   mFLJ00041   123 LQHLQHhgshlkanashdqpqkhglelasdhhgnfSITLRNVTPRDSGLY 172  

                   tCvv<-*
                    C v   
   mFLJ00041   173 CCLV    176  

V-set: domain 1 of 1, from 61 to 197: score 29.7, E = 6.7e-05
                   *->qstvtqepprLLLASLfWptsvtvaeGgsvtLpCtysG.tfddssss
                      ++ vt+ p +            + +eG+++tL+C   G++ +++  +
   mFLJ00041    61    AFKVTT-PYS----------LYVCPEGQNATLTCRILGpVSKGH--D 94   

                   sgtgsvyWyrqqpp...............Gekpeliiisyytyysysegn
                    ++ + +Wy   + ++ +  +++++ ++   ++ +++     ++    + 
   mFLJ00041    95 VTI-YKTWYL-SSRgevqmckehrpirnfTLQHLQHH-----GSHLKANA 137  

                   gtvserfkgrvrfsgnpskgdfsLtIsnlqlsDsGtYyCa..........
                   ++ ++++ g    s + +  +fs+t++n+++ DsG Y C   + ++++++
   mFLJ00041   138 SHDQPQKHGLELASDHHG--NFSITLRNVTPRDSGLYCCLvielknhhpe 185  

                   ...gggtrLtVl<-*
                    +  g+++L+V    
   mFLJ00041   186 qrfYGSMELQVQ    197  

//