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SpecieshumanProduct IDFXC03353Cloning SiteSgfI-PmeIGeneKIBB9843SymbolHTR1F
Alias : 5-HT-1F, 5-HT1F, 5HT6, HTR1EL, MR77Description5-hydroxytryptamine (serotonin) receptor 1F, G protein-coupledOriginal Clone IDcp00412
Length: 1098 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 366 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS2920.1 2.4e-116 100.0 HTR1F CCDS5006.1 5.1e-62 57.0 HTR1E CCDS4986.1 9e-53 48.2 HTR1B CCDS231.1 4.5e-50 50.4 HTR1D CCDS33829.1 3.8e-28 34.0 DRD3
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR000450 2 15 PR00515 5-Hydroxytryptamine 1F receptor IPR000450 15 29 PR00515 5-Hydroxytryptamine 1F receptor IPR000276 25 49 PR00237 GPCR IPR002231 44 52 PR01101 5-Hydroxytryptamine receptor IPR000276 58 79 PR00237 GPCR IPR000276 103 125 PR00237 GPCR IPR000276 139 160 PR00237 GPCR IPR000450 162 178 PR00515 5-Hydroxytryptamine 1F receptor IPR000276 182 205 PR00237 GPCR IPR002231 182 190 PR01101 5-Hydroxytryptamine receptor IPR000450 215 234 PR00515 5-Hydroxytryptamine 1F receptor IPR000450 235 250 PR00515 5-Hydroxytryptamine 1F receptor IPR000450 250 266 PR00515 5-Hydroxytryptamine 1F receptor IPR000450 267 285 PR00515 5-Hydroxytryptamine 1F receptor IPR000276 291 315 PR00237 GPCR IPR002231 309 320 PR01101 5-Hydroxytryptamine receptor IPR000276 329 355 PR00237 GPCR IPR002231 348 353 PR01101 5-Hydroxytryptamine receptor HMMPfam IPR000276 41 347 PF00001 GPCR ProfileScan IPR017452 40 347 PS50262 GPCR
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 25 LVSLTLSGLALMTTTINSLVIAA 47 PRIMARY 23 2 60 YLICSLAVTDFLVAVLVMPFSIV 82 PRIMARY 23 3 100 LSVDITCCTCSILHLSAIALDR 121 SECONDARY 22 4 139 HAGIMITIVWIISVFISMPPLFW 161 PRIMARY 23 5 182 TIYSTFGAFYIPLALILILYYKI 204 PRIMARY 23 6 296 GLILGAFVICWLPFFVKELVVNV 318 PRIMARY 23 7 329 SNFLAWLGYLNSLINPLIYTIFN 351 SECONDARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_001309137 366 182134 100.0 100.0 XP_005264808 366 182134 100.0 100.0 XP_011531966 366 182134 100.0 100.0 NP_001309139 366 182134 100.0 100.0 NP_000857 366 182134 100.0 100.0 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB9843 Download>KIBB9843 1098 bp ATGGATTTCTTAAATTCATCTGATCAAAACTTGACCTCAGAGGAACTGTTAAACAGAATG CCATCCAAAATTCTGGTGTCCCTCACTCTGTCTGGGCTGGCACTGATGACAACAACTATC AACTCCCTTGTGATCGCTGCAATTATTGTGACCCGGAAGCTGCACCATCCAGCCAATTAT TTAATTTGTTCCCTTGCAGTCACAGATTTTCTTGTGGCTGTCCTGGTGATGCCCTTCAGC ATTGTGTATATTGTGAGAGAGAGCTGGATTATGGGGCAAGTGGTCTGTGACATTTGGCTG AGTGTTGACATTACCTGCTGCACGTGCTCCATCTTGCATCTCTCAGCTATAGCTTTGGAT CGGTATCGAGCAATCACAGATGCTGTTGAGTATGCCAGGAAAAGGACTCCAAAGCATGCT GGCATTATGATTACAATAGTTTGGATTATATCTGTTTTTATCTCTATGCCTCCTCTATTC TGGAGGCACCAAGGAACTAGCAGAGATGATGAATGCATCATCAAGCACGACCACATTGTT TCCACCATTTACTCAACATTTGGAGCTTTCTACATCCCACTGGCATTGATTTTGATCCTT TACTACAAAATATATAGAGCAGCAAAGACATTATACCACAAGAGACAAGCAAGTAGGATT GCAAAGGAGGAGGTGAATGGCCAAGTCCTTTTGGAGAGTGGTGAGAAAAGCACTAAATCA GTTTCCACATCCTATGTACTAGAAAAGTCTTTATCTGACCCATCAACAGACTTTGATAAA ATTCATAGCACAGTGAGAAGTCTCAGGTCTGAATTCAAGCATGAGAAATCTTGGAGAAGG CAAAAGATCTCAGGTACAAGAGAACGGAAAGCAGCCACTACCCTGGGATTAATCTTGGGT GCATTTGTAATATGTTGGCTTCCTTTTTTTGTAAAAGAATTAGTTGTTAATGTCTGTGAC AAATGTAAAATTTCTGAAGAAATGTCCAATTTTTTGGCATGGCTTGGGTATCTCAATTCC CTTATAAATCCACTGATTTACACAATCTTTAATGAAGACTTCAAGAAAGCATTCCAAAAG CTTGTGCGATGTCGATGT
Cloned ORF protein sequence for pF1KB9843 Download>KIBB9843 366 aa MDFLNSSDQNLTSEELLNRMPSKILVSLTLSGLALMTTTINSLVIAAIIVTRKLHHPANY LICSLAVTDFLVAVLVMPFSIVYIVRESWIMGQVVCDIWLSVDITCCTCSILHLSAIALD RYRAITDAVEYARKRTPKHAGIMITIVWIISVFISMPPLFWRHQGTSRDDECIIKHDHIV STIYSTFGAFYIPLALILILYYKIYRAAKTLYHKRQASRIAKEEVNGQVLLESGEKSTKS VSTSYVLEKSLSDPSTDFDKIHSTVRSLRSEFKHEKSWRRQKISGTRERKAATTLGLILG AFVICWLPFFVKELVVNVCDKCKISEEMSNFLAWLGYLNSLINPLIYTIFNEDFKKAFQK LVRCRC
Nucleotide Sequence (with vector) for pF1KB9843 Download>pF1KB9843 4211 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGATTTCTTA AATTCATCTGATCAAAACTTGACCTCAGAGGAACTGTTAAACAGAATGCCATCCAAAATT CTGGTGTCCCTCACTCTGTCTGGGCTGGCACTGATGACAACAACTATCAACTCCCTTGTG ATCGCTGCAATTATTGTGACCCGGAAGCTGCACCATCCAGCCAATTATTTAATTTGTTCC CTTGCAGTCACAGATTTTCTTGTGGCTGTCCTGGTGATGCCCTTCAGCATTGTGTATATT GTGAGAGAGAGCTGGATTATGGGGCAAGTGGTCTGTGACATTTGGCTGAGTGTTGACATT ACCTGCTGCACGTGCTCCATCTTGCATCTCTCAGCTATAGCTTTGGATCGGTATCGAGCA ATCACAGATGCTGTTGAGTATGCCAGGAAAAGGACTCCAAAGCATGCTGGCATTATGATT ACAATAGTTTGGATTATATCTGTTTTTATCTCTATGCCTCCTCTATTCTGGAGGCACCAA GGAACTAGCAGAGATGATGAATGCATCATCAAGCACGACCACATTGTTTCCACCATTTAC TCAACATTTGGAGCTTTCTACATCCCACTGGCATTGATTTTGATCCTTTACTACAAAATA TATAGAGCAGCAAAGACATTATACCACAAGAGACAAGCAAGTAGGATTGCAAAGGAGGAG GTGAATGGCCAAGTCCTTTTGGAGAGTGGTGAGAAAAGCACTAAATCAGTTTCCACATCC TATGTACTAGAAAAGTCTTTATCTGACCCATCAACAGACTTTGATAAAATTCATAGCACA GTGAGAAGTCTCAGGTCTGAATTCAAGCATGAGAAATCTTGGAGAAGGCAAAAGATCTCA GGTACAAGAGAACGGAAAGCAGCCACTACCCTGGGATTAATCTTGGGTGCATTTGTAATA TGTTGGCTTCCTTTTTTTGTAAAAGAATTAGTTGTTAATGTCTGTGACAAATGTAAAATT TCTGAAGAAATGTCCAATTTTTTGGCATGGCTTGGGTATCTCAATTCCCTTATAAATCCA CTGATTTACACAATCTTTAATGAAGACTTCAAGAAAGCATTCCAAAAGCTTGTGCGATGT CGATGTGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGG CATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCAC CGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTT GCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTA TCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGT CCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTT CTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCT TCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAAC TGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAG ACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCC GCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGAT GCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTG TCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACG GGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTA TTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTA TCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTC GACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTC GATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGG CTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTG CCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGT GTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGC GGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGC ATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGA CCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCAC AGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAA CCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCA CAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGC GTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATA CCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTA TCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCA GCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGA CTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGG TGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGG TATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGG CAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAG AAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAA CGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGAT CCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAA ACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGG TTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTG GTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGC GTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAA ACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGAT ACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAG CGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGG TAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGG CTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGA GTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGC GGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGG ATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATG TATCCGCTCAT
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