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SpecieshumanProduct IDFXC02641Cloning SiteSgfI-PmeIGeneKIBB8180SymbolHCRTR1
Alias : ORXR1, OX1R, OXR1Descriptionhypocretin (orexin) receptor 1Original Clone IDcp00540
Length: 1275 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 425 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS344.1 1.2e-146 100.0 HCRTR1 CCDS4956.1 4.9e-95 69.2 HCRTR2 CCDS53539.1 7.5e-21 33.9 NPFFR1 CCDS3552.1 2.5e-20 33.2 NPFFR2 CCDS47072.1 2.5e-20 33.2 NPFFR2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR000204 19 30 PR01064 Orexin receptor IPR000204 31 47 PR01064 Orexin receptor IPR000276 48 72 PR00237 GPCR IPR000276 81 102 PR00237 GPCR IPR000204 99 115 PR01064 Orexin receptor IPR000276 126 148 PR00237 GPCR IPR000204 151 162 PR01064 Orexin receptor IPR000276 160 181 PR00237 GPCR IPR000204 190 206 PR01064 Orexin receptor IPR000204 206 224 PR01064 Orexin receptor IPR000276 216 239 PR00237 GPCR IPR000204 239 259 PR01064 Orexin receptor IPR004059 253 265 PR01521 Orexin receptor IPR000204 282 298 PR01064 Orexin receptor IPR000276 296 320 PR00237 GPCR IPR000204 321 345 PR01064 Orexin receptor IPR000276 340 366 PR00237 GPCR IPR004059 393 404 PR01521 Orexin receptor IPR004059 405 414 PR01521 Orexin receptor IPR000204 409 422 PR01064 Orexin receptor IPR004059 415 425 PR01521 Orexin receptor HMMPfam IPR000276 63 358 PF00001 GPCR ProfileScan IPR017452 63 358 PS50262 GPCR
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 48 VLIAAYVAVFVVALVGNTLVCLA 70 PRIMARY 23 2 83 YFIVNLSLADVLVTAICLPASLL 105 PRIMARY 23 3 116 HALCKVIPYLQAVSVSVAVLTLS 138 PRIMARY 23 4 164 SILGIWAVSLAIMVPQAAVMECS 186 PRIMARY 23 5 215 YHSCFFIVTYLAPLGLMAMAYFQ 237 PRIMARY 23 6 299 MLMVVLLVFALCYLPISVLNVL 320 PRIMARY 22
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_016856594 425 602392 100.0 100.0 XP_016856595 425 602392 100.0 100.0 NP_001516 425 602392 100.0 100.0 XP_016856596 389 602392 96.6 89.9 NP_001517 444 602393 69.2 96.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB8180 Download>KIBB8180 1275 bp ATGGAGCCCTCAGCCACCCCAGGGGCTCAGATGGGGGTCCCCCCTGGCAGCAGAGAGCCG TCCCCTGTGCCTCCAGACTATGAAGATGAGTTTCTCCGCTATCTGTGGCGCGATTATCTG TACCCAAAACAGTATGAGTGGGTCCTCATCGCAGCCTATGTGGCTGTGTTCGTCGTGGCC CTGGTGGGCAACACGCTGGTCTGCCTGGCCGTGTGGCGGAACCACCACATGAGGACAGTC ACCAACTACTTCATTGTCAACCTGTCCCTGGCTGACGTTCTGGTGACTGCTATCTGCCTG CCGGCCAGCCTGCTGGTGGACATCACTGAGTCCTGGCTGTTCGGCCATGCCCTCTGCAAG GTCATCCCCTATCTACAGGCTGTGTCCGTGTCAGTGGCAGTGCTAACTCTCAGCTTCATC GCCCTGGACCGCTGGTATGCCATCTGCCACCCACTATTGTTCAAGAGCACAGCCCGGCGG GCCCGTGGCTCCATCCTGGGCATCTGGGCTGTGTCGCTGGCCATCATGGTGCCCCAGGCT GCAGTCATGGAATGCAGCAGTGTGCTGCCTGAGCTAGCCAACCGCACACGGCTCTTCTCA GTCTGTGATGAACGCTGGGCAGATGACCTCTATCCCAAGATCTACCACAGTTGCTTCTTT ATTGTCACCTACCTGGCCCCACTGGGCCTCATGGCCATGGCCTATTTCCAGATATTCCGC AAGCTCTGGGGCCGCCAGATCCCCGGCACCACCTCAGCACTGGTGCGGAACTGGAAGCGC CCCTCAGACCAGCTGGGGGACCTGGAGCAGGGCCTGAGTGGAGAGCCCCAGCCCCGGGCC CGCGCCTTCCTGGCTGAAGTGAAGCAGATGCGTGCACGGAGGAAGACAGCCAAGATGCTG ATGGTGGTGCTGCTGGTCTTCGCCCTCTGCTACCTGCCCATCAGCGTCCTCAATGTCCTT AAGAGGGTGTTCGGGATGTTCCGCCAAGCCAGTGACCGCGAAGCTGTCTACGCCTGCTTC ACCTTCTCCCACTGGCTGGTGTACGCCAACAGCGCTGCCAACCCCATCATCTACAACTTC CTCAGTGGCAAATTCCGGGAGCAGTTTAAGGCTGCCTTCTCCTGCTGCCTGCCTGGCCTG GGTCCCTGCGGCTCTCTGAAGGCCCCTAGTCCCCGCTCCTCTGCCAGCCACAAGTCCTTG TCCTTGCAGAGCCGATGCTCCATCTCCAAAATCTCTGAGCATGTGGTGCTCACCAGCGTC ACCACAGTGCTGCCC
Cloned ORF protein sequence for pF1KB8180 Download>KIBB8180 425 aa MEPSATPGAQMGVPPGSREPSPVPPDYEDEFLRYLWRDYLYPKQYEWVLIAAYVAVFVVA LVGNTLVCLAVWRNHHMRTVTNYFIVNLSLADVLVTAICLPASLLVDITESWLFGHALCK VIPYLQAVSVSVAVLTLSFIALDRWYAICHPLLFKSTARRARGSILGIWAVSLAIMVPQA AVMECSSVLPELANRTRLFSVCDERWADDLYPKIYHSCFFIVTYLAPLGLMAMAYFQIFR KLWGRQIPGTTSALVRNWKRPSDQLGDLEQGLSGEPQPRARAFLAEVKQMRARRKTAKML MVVLLVFALCYLPISVLNVLKRVFGMFRQASDREAVYACFTFSHWLVYANSAANPIIYNF LSGKFREQFKAAFSCCLPGLGPCGSLKAPSPRSSASHKSLSLQSRCSISKISEHVVLTSV TTVLP
Nucleotide Sequence (with vector) for pF1KB8180 Download>pF1KB8180 4388 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGAGCCCTCA GCCACCCCAGGGGCTCAGATGGGGGTCCCCCCTGGCAGCAGAGAGCCGTCCCCTGTGCCT CCAGACTATGAAGATGAGTTTCTCCGCTATCTGTGGCGCGATTATCTGTACCCAAAACAG TATGAGTGGGTCCTCATCGCAGCCTATGTGGCTGTGTTCGTCGTGGCCCTGGTGGGCAAC ACGCTGGTCTGCCTGGCCGTGTGGCGGAACCACCACATGAGGACAGTCACCAACTACTTC ATTGTCAACCTGTCCCTGGCTGACGTTCTGGTGACTGCTATCTGCCTGCCGGCCAGCCTG CTGGTGGACATCACTGAGTCCTGGCTGTTCGGCCATGCCCTCTGCAAGGTCATCCCCTAT CTACAGGCTGTGTCCGTGTCAGTGGCAGTGCTAACTCTCAGCTTCATCGCCCTGGACCGC TGGTATGCCATCTGCCACCCACTATTGTTCAAGAGCACAGCCCGGCGGGCCCGTGGCTCC ATCCTGGGCATCTGGGCTGTGTCGCTGGCCATCATGGTGCCCCAGGCTGCAGTCATGGAA TGCAGCAGTGTGCTGCCTGAGCTAGCCAACCGCACACGGCTCTTCTCAGTCTGTGATGAA CGCTGGGCAGATGACCTCTATCCCAAGATCTACCACAGTTGCTTCTTTATTGTCACCTAC CTGGCCCCACTGGGCCTCATGGCCATGGCCTATTTCCAGATATTCCGCAAGCTCTGGGGC CGCCAGATCCCCGGCACCACCTCAGCACTGGTGCGGAACTGGAAGCGCCCCTCAGACCAG CTGGGGGACCTGGAGCAGGGCCTGAGTGGAGAGCCCCAGCCCCGGGCCCGCGCCTTCCTG GCTGAAGTGAAGCAGATGCGTGCACGGAGGAAGACAGCCAAGATGCTGATGGTGGTGCTG CTGGTCTTCGCCCTCTGCTACCTGCCCATCAGCGTCCTCAATGTCCTTAAGAGGGTGTTC GGGATGTTCCGCCAAGCCAGTGACCGCGAAGCTGTCTACGCCTGCTTCACCTTCTCCCAC TGGCTGGTGTACGCCAACAGCGCTGCCAACCCCATCATCTACAACTTCCTCAGTGGCAAA TTCCGGGAGCAGTTTAAGGCTGCCTTCTCCTGCTGCCTGCCTGGCCTGGGTCCCTGCGGC TCTCTGAAGGCCCCTAGTCCCCGCTCCTCTGCCAGCCACAAGTCCTTGTCCTTGCAGAGC CGATGCTCCATCTCCAAAATCTCTGAGCATGTGGTGCTCACCAGCGTCACCACAGTGCTG CCCGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCAT GCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGC TGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCT GAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCG CCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCA GATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTA CGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCA AAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGG ATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACA GGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCT TGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCC GCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCC GGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGC GTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTG GGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCC ATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGAC CACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGAT CAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTC AAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCG AATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTG GCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGC GAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATC GCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCG ACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGA ATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCG TAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAA AAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTT TCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCT GTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCT CAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCC CGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTT ATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGC TACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTAT CTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAA ACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAA AAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGA AAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCT TTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACC ATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTG CATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTT TGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTA CAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACC GCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACA GATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGC GGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAG TGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTC AGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTA GGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGG CAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATG GCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTAT CCGCTCAT
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