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SpecieshumanProduct IDFXC03433Cloning SiteSgfI-PmeIGeneKIBB5892SymbolLRRC1
Alias : LANO, dJ523E19.1Descriptionleucine rich repeat containing 1Original Clone IDcs00592
Length: 1572 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 524 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS4953.2 3.5e-176 99.8 LRRC1 CCDS6411.1 2.4e-106 64.5 SCRIB CCDS6412.1 2.4e-106 64.5 SCRIB CCDS81341.1 1.3e-61 44.3 LRRC7 CCDS645.1 1.4e-61 44.3 LRRC7
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition HMMPfam IPR001611 60 80 PF00560 Leucine-rich repeat IPR001611 83 103 PF00560 Leucine-rich repeat IPR001611 107 127 PF00560 Leucine-rich repeat IPR001611 175 194 PF00560 Leucine-rich repeat IPR001611 198 219 PF00560 Leucine-rich repeat HMMSmart NULL 35 54 SM00364 NULL IPR003591 36 57 SM00369 Leucine-rich repeat IPR003591 58 80 SM00369 Leucine-rich repeat NULL 58 77 SM00364 NULL IPR003591 81 104 SM00369 Leucine-rich repeat NULL 83 100 SM00364 NULL NULL 104 123 SM00364 NULL IPR003591 127 149 SM00369 Leucine-rich repeat NULL 127 146 SM00364 NULL IPR003591 150 172 SM00369 Leucine-rich repeat NULL 150 169 SM00364 NULL IPR003591 173 195 SM00369 Leucine-rich repeat NULL 173 192 SM00364 NULL IPR003591 196 218 SM00369 Leucine-rich repeat NULL 196 215 SM00364 NULL IPR003591 219 241 SM00369 Leucine-rich repeat NULL 219 238 SM00364 NULL IPR003591 242 264 SM00369 Leucine-rich repeat NULL 242 261 SM00364 NULL IPR003591 265 288 SM00369 Leucine-rich repeat NULL 265 284 SM00364 NULL NULL 288 307 SM00364 NULL IPR003591 311 334 SM00369 Leucine-rich repeat NULL 311 330 SM00364 NULL IPR003591 335 357 SM00369 Leucine-rich repeat NULL 336 353 SM00364 NULL IPR003591 358 380 SM00369 Leucine-rich repeat ProfileScan IPR001611 37 58 PS51450 Leucine-rich repeat IPR001611 60 81 PS51450 Leucine-rich repeat IPR001611 83 104 PS51450 Leucine-rich repeat IPR001611 106 127 PS51450 Leucine-rich repeat IPR001611 129 150 PS51450 Leucine-rich repeat IPR001611 152 173 PS51450 Leucine-rich repeat IPR001611 175 196 PS51450 Leucine-rich repeat IPR001611 198 219 PS51450 Leucine-rich repeat IPR001611 221 242 PS51450 Leucine-rich repeat IPR001611 244 265 PS51450 Leucine-rich repeat IPR001611 267 288 PS51450 Leucine-rich repeat IPR001611 290 311 PS51450 Leucine-rich repeat IPR001611 313 334 PS51450 Leucine-rich repeat IPR001611 336 357 PS51450 Leucine-rich repeat IPR001611 359 381 PS51450 Leucine-rich repeat IPR001611 382 402 PS51450 Leucine-rich repeat
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_011513028 524 608195 99.8 100.0 NP_060684 524 608195 99.8 100.0 XP_011513029 465 608195 97.1 85.3 NP_056171 1630 607733 64.5 95.2 NP_874365 1655 607733 64.5 95.2 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB5892 Download>KIBB5892 1572 bp ATGTTCCACTGCATCCCCCTGTGGCGGTGCAACCGTCATGTGGAGAGCATCGACAAGCGC CACTGCTCGCTGGTCTACGTCCCCGAGGAGATCTACCGCTATGCCCGGAGCCTGGAGGAG CTGCTGCTGGACGCCAACCAGCTCCGCGAGCTGCCCGAGCAATTTTTCCAGCTAGTCAAA TTACGAAAGCTTGGACTTAGTGATAATGAAATTCAGCGGCTCCCTCCAGAAATAGCAAAC TTCATGCAGCTGGTGGAACTAGATGTGTCTCGAAATGAGATTCCTGAAATTCCAGAAAGC ATTTCATTCTGTAAAGCACTGCAGGTAGCTGACTTCAGCGGAAACCCACTGACTAGGTTG CCAGAAAGCTTTCCTGAATTACAGAATTTAACATGTCTTTCTGTAAATGACATCTCACTA CAGTCTCTACCTGAAAATATTGGCAATCTTTATAACCTGGCTTCACTGGAACTGAGAGAG AATCTTCTTACATATCTTCCTGACTCTCTTACCCAGCTGCGAAGACTAGAAGAACTTGAT TTAGGAAACAATGAAATATATAATTTGCCAGAATCAGTTGGAGCCCTCTTACATCTAAAA GATCTCTGGTTGGATGGAAATCAACTGTCAGAATTACCTCAGGAAATAGGAAATCTGAAG AACCTGCTGTGTTTAGATGTCTCTGAAAACAGGTTGGAAAGACTTCCTGAAGAAATCAGT GGCCTGACTTCATTAACGGATTTAGTCATTTCCCAGAACTTATTAGAAACGATTCCGGAT GGCATTGGAAAACTAAAGAAACTGTCAATCTTGAAGGTGGATCAGAATAGACTCACACAG TTGCCTGAAGCAGTTGGGGAATGTGAAAGTCTCACTGAGTTAGTTCTTACAGAAAATCAG CTCCTGACCCTGCCTAAAAGCATTGGAAAACTAAAGAAGTTGAGCAACTTGAATGCAGAC AGAAATAAATTAGTGTCCTTACCAAAAGAGATCGGCGGGTGCTGCAGCCTCACTGTGTTC TGTGTACGTGACAACAGACTAACTCGGATACCTGCAGAGGTGTCACAGGCAACAGAACTT CATGTCCTGGATGTGGCAGGGAACAGGTTGCTGCATCTACCTTTATCCCTGACTGCCTTG AAGTTGAAGGCTCTGTGGCTATCTGACAACCAGTCCCAGCCCCTGCTTACATTCCAGACA GACACAGACTACACCACAGGAGAGAAGATTTTAACCTGTGTCTTACTTCCTCAGCTGCCT TCTGAACCTACTTGTCAAGAGAATCTGCCTCGCTGTGGTGCACTGGAGAACTTGGTAAAT GATGTCTCTGATGAAGCCTGGAACGAGCGTGCTGTCAACAGAGTCAGTGCGATCCGATTT GTGGAGGATGAGAAAGATGAAGAAGACAATGAGACGAGAACACTTCTAAGGCGAGCCACT CCACACCCAGGGGAGTTAAAGCACATGAAAAAGACAGTGGAGAATTTACGGAATGACATG AATGCTGCTAAAGGACTGGACTCAAACAAAAACGAGGTCAATCATGCCATTGACCGAGTG ACCACTTCTGTG
Cloned ORF protein sequence for pF1KB5892 Download>KIBB5892 524 aa MFHCIPLWRCNRHVESIDKRHCSLVYVPEEIYRYARSLEELLLDANQLRELPEQFFQLVK LRKLGLSDNEIQRLPPEIANFMQLVELDVSRNEIPEIPESISFCKALQVADFSGNPLTRL PESFPELQNLTCLSVNDISLQSLPENIGNLYNLASLELRENLLTYLPDSLTQLRRLEELD LGNNEIYNLPESVGALLHLKDLWLDGNQLSELPQEIGNLKNLLCLDVSENRLERLPEEIS GLTSLTDLVISQNLLETIPDGIGKLKKLSILKVDQNRLTQLPEAVGECESLTELVLTENQ LLTLPKSIGKLKKLSNLNADRNKLVSLPKEIGGCCSLTVFCVRDNRLTRIPAEVSQATEL HVLDVAGNRLLHLPLSLTALKLKALWLSDNQSQPLLTFQTDTDYTTGEKILTCVLLPQLP SEPTCQENLPRCGALENLVNDVSDEAWNERAVNRVSAIRFVEDEKDEEDNETRTLLRRAT PHPGELKHMKKTVENLRNDMNAAKGLDSNKNEVNHAIDRVTTSV
Nucleotide Sequence (with vector) for pF1KB5892 Download>pF1KB5892 4685 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGTTCCACTGC ATCCCCCTGTGGCGGTGCAACCGTCATGTGGAGAGCATCGACAAGCGCCACTGCTCGCTG GTCTACGTCCCCGAGGAGATCTACCGCTATGCCCGGAGCCTGGAGGAGCTGCTGCTGGAC GCCAACCAGCTCCGCGAGCTGCCCGAGCAATTTTTCCAGCTAGTCAAATTACGAAAGCTT GGACTTAGTGATAATGAAATTCAGCGGCTCCCTCCAGAAATAGCAAACTTCATGCAGCTG GTGGAACTAGATGTGTCTCGAAATGAGATTCCTGAAATTCCAGAAAGCATTTCATTCTGT AAAGCACTGCAGGTAGCTGACTTCAGCGGAAACCCACTGACTAGGTTGCCAGAAAGCTTT CCTGAATTACAGAATTTAACATGTCTTTCTGTAAATGACATCTCACTACAGTCTCTACCT GAAAATATTGGCAATCTTTATAACCTGGCTTCACTGGAACTGAGAGAGAATCTTCTTACA TATCTTCCTGACTCTCTTACCCAGCTGCGAAGACTAGAAGAACTTGATTTAGGAAACAAT GAAATATATAATTTGCCAGAATCAGTTGGAGCCCTCTTACATCTAAAAGATCTCTGGTTG GATGGAAATCAACTGTCAGAATTACCTCAGGAAATAGGAAATCTGAAGAACCTGCTGTGT TTAGATGTCTCTGAAAACAGGTTGGAAAGACTTCCTGAAGAAATCAGTGGCCTGACTTCA TTAACGGATTTAGTCATTTCCCAGAACTTATTAGAAACGATTCCGGATGGCATTGGAAAA CTAAAGAAACTGTCAATCTTGAAGGTGGATCAGAATAGACTCACACAGTTGCCTGAAGCA GTTGGGGAATGTGAAAGTCTCACTGAGTTAGTTCTTACAGAAAATCAGCTCCTGACCCTG CCTAAAAGCATTGGAAAACTAAAGAAGTTGAGCAACTTGAATGCAGACAGAAATAAATTA GTGTCCTTACCAAAAGAGATCGGCGGGTGCTGCAGCCTCACTGTGTTCTGTGTACGTGAC AACAGACTAACTCGGATACCTGCAGAGGTGTCACAGGCAACAGAACTTCATGTCCTGGAT GTGGCAGGGAACAGGTTGCTGCATCTACCTTTATCCCTGACTGCCTTGAAGTTGAAGGCT CTGTGGCTATCTGACAACCAGTCCCAGCCCCTGCTTACATTCCAGACAGACACAGACTAC ACCACAGGAGAGAAGATTTTAACCTGTGTCTTACTTCCTCAGCTGCCTTCTGAACCTACT TGTCAAGAGAATCTGCCTCGCTGTGGTGCACTGGAGAACTTGGTAAATGATGTCTCTGAT GAAGCCTGGAACGAGCGTGCTGTCAACAGAGTCAGTGCGATCCGATTTGTGGAGGATGAG AAAGATGAAGAAGACAATGAGACGAGAACACTTCTAAGGCGAGCCACTCCACACCCAGGG GAGTTAAAGCACATGAAAAAGACAGTGGAGAATTTACGGAATGACATGAATGCTGCTAAA GGACTGGACTCAAACAAAAACGAGGTCAATCATGCCATTGACCGAGTGACCACTTCTGTG GTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCA AGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGA GCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAA AGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCA TGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGAT AGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGT GTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAA GAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATG GCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGA TGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGG GTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCC GTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGT GCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTT CCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGC GAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATC ATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCAC CAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAG GATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAG GCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAAT ATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCG GACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAA TGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCC TTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACC AAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATC AGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAA AAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAA TCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCC CCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTC CGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAG TTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGA CCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATC GCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTAC AGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTG CGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACA AACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAA AGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAA CTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTT ATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATG AAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCAT AGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGT TGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAA TTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCA GTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGAT TAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGT GGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGT GGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGT CGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGA CAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAG GACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCC TTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCG CTCAT
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