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SpecieshumanProduct IDFXC03558Cloning SiteSgfI-PmeIGeneKIBB5407SymbolKCNF1
Alias : IK8, KCNF, KV5.1, kH1Descriptionpotassium channel, voltage gated modifier subfamily F, member 1Original Clone IDbm04780
Length: 1482 bp
Restriction map A
Restriction map B
Genomic Structure
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Length: 494 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS1676.1 1.7e-206 100.0 KCNF1 CCDS13418.1 1.3e-73 41.9 KCNB1 CCDS6209.1 2.7e-72 40.6 KCNB2 CCDS6314.1 7.7e-53 37.5 KCNV1 CCDS12019.1 5e-50 32.5 KCNG2
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
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Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR003971 28 40 PR01494 Potassium channel IPR003971 68 81 PR01494 Potassium channel IPR003091 76 95 PR00169 Voltage-dependent potassium channel IPR003968 76 86 PR01491 Potassium channel IPR003971 92 107 PR01494 Potassium channel IPR003971 115 127 PR01494 Potassium channel IPR003091 175 203 PR00169 Voltage-dependent potassium channel IPR003091 224 247 PR00169 Voltage-dependent potassium channel IPR003091 250 270 PR00169 Voltage-dependent potassium channel IPR003091 294 320 PR00169 Voltage-dependent potassium channel IPR003968 299 307 PR01491 Potassium channel IPR003091 323 346 PR00169 Voltage-dependent potassium channel IPR003968 323 337 PR01491 Potassium channel IPR003091 354 376 PR00169 Voltage-dependent potassium channel IPR003091 383 409 PR00169 Voltage-dependent potassium channel IPR003971 393 411 PR01494 Potassium channel IPR003968 394 405 PR01491 Potassium channel HMMPfam IPR003131 25 126 PF02214 Potassium channel IPR005821 225 402 PF00520 Ion transport
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 181 ARVVAVLSFLLILVSSVVMCMGT 203 PRIMARY 23 2 251 ALSFMNIVDVLAILPFYVSLTLT 273 PRIMARY 23 3 320 SFKELGLLLMYLAVGIFVFSALG 342 SECONDARY 23 4 383 GKLNAAISFLCGVIAIALPIHPI 405 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_002227 494 603787 100.0 100.0 XP_006723847 858 600397,616056 41.9 88.5 NP_004966 858 600397,616056 41.9 88.5 XP_011527101 858 600397,616056 41.9 88.5 NP_004761 911 607738 40.6 92.5 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KB5407 Download>KIBB5407 1482 bp ATGGACGGGTCCGGGGAGCGCAGCCTCCCGGAGCCGGGCAGCCAGAGCTCCGCTGCCAGC GACGACATAGAGATAGTCGTCAACGTGGGGGGCGTGCGGCAGGTGCTGTACGGGGACCTC CTCAGTCAGTACCCTGAGACCCGGCTGGCGGAGCTCATCAACTGCTTGGCTGGGGGCTAC GACACCATCTTCTCCCTGTGCGACGACTACGACCCCGGCAAGCGCGAGTTCTACTTTGAC AGGGACCCGGACGCCTTCAAGTGTGTCATCGAGGTGTACTATTTCGGGGAGGTCCACATG AAGAAGGGCATCTGCCCCATCTGCTTCAAGAACGAGATGGACTTCTGGAAGGTGGACCTC AAGTTCCTGGACGACTGTTGCAAGAGCCACCTGAGCGAGAAGCGCGAGGAGCTGGAGGAG ATCGCGCGCCGCGTGCAGCTCATCCTGGACGACCTGGGCGTGGACGCGGCCGAGGGCCGC TGGCGCCGCTGCCAGAAGTGCGTCTGGAAGTTCCTGGAGAAGCCCGAGTCGTCGTGCCCG GCGCGGGTGGTGGCCGTGCTCTCCTTCCTGCTCATCCTCGTCTCGTCCGTGGTCATGTGC ATGGGCACCATCCCCGAGCTGCAGGTGCTGGACGCCGAGGGCAACCGCGTGGAGCACCCG ACGCTGGAGAACGTGGAGACGGCGTGCATTGGCTGGTTCACCCTGGAGTACCTGCTGCGC CTCTTCTCGTCACCCAACAAGCTGCACTTCGCGCTGTCCTTCATGAACATTGTGGACGTG CTGGCCATCCTCCCCTTCTACGTGAGCCTCACGCTCACGCACCTGGGTGCCCGCATGATG GAGCTGACCAACGTGCAGCAGGCCGTGCAGGCGCTGCGGATCATGCGCATCGCGCGCATC TTCAAGCTGGCCCGCCACTCCTCGGGCCTGCAGACCCTCACCTATGCCCTCAAGCGCAGC TTCAAGGAACTGGGGCTGCTGCTCATGTACCTGGCAGTGGGTATCTTCGTCTTCTCTGCC CTGGGCTACACCATGGAGCAGAGCCATCCAGAGACCCTGTTTAAGAGCATCCCCCAGTCC TTCTGGTGGGCCATCATCACCATGACCACCGTCGGCTACGGCGACATCTACCCCAAGACC ACGCTGGGCAAGCTCAACGCGGCCATCAGCTTCTTGTGTGGTGTCATCGCCATCGCCCTG CCCATCCACCCCATCATCAACAACTTTGTCAGGTACTACAACAAGCAGCGCGTCCTGGAG ACCGCGGCCAAGCACGAGCTGGAGCTGATGGAACTCAACTCCAGCAGCGGGGGCGAGGGC AAGACCGGGGGCTCCCGCAGTGACCTGGACAACCTCCCTCCAGAGCCTGCGGGGAAGGAG GCGCCGAGCTGCAGCAGCCGGCTGAAGCTCTCCCACAGCGACACCTTCATCCCCCTCCTG ACCGAGGAGAAGCACCACAGGACCCGGCTCCAGAGTTGCAAG
Cloned ORF protein sequence for pF1KB5407 Download>KIBB5407 494 aa MDGSGERSLPEPGSQSSAASDDIEIVVNVGGVRQVLYGDLLSQYPETRLAELINCLAGGY DTIFSLCDDYDPGKREFYFDRDPDAFKCVIEVYYFGEVHMKKGICPICFKNEMDFWKVDL KFLDDCCKSHLSEKREELEEIARRVQLILDDLGVDAAEGRWRRCQKCVWKFLEKPESSCP ARVVAVLSFLLILVSSVVMCMGTIPELQVLDAEGNRVEHPTLENVETACIGWFTLEYLLR LFSSPNKLHFALSFMNIVDVLAILPFYVSLTLTHLGARMMELTNVQQAVQALRIMRIARI FKLARHSSGLQTLTYALKRSFKELGLLLMYLAVGIFVFSALGYTMEQSHPETLFKSIPQS FWWAIITMTTVGYGDIYPKTTLGKLNAAISFLCGVIAIALPIHPIINNFVRYYNKQRVLE TAAKHELELMELNSSSGGEGKTGGSRSDLDNLPPEPAGKEAPSCSSRLKLSHSDTFIPLL TEEKHHRTRLQSCK
Nucleotide Sequence (with vector) for pF1KB5407 Download>pF1KB5407 4595 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGGACGGGTCC GGGGAGCGCAGCCTCCCGGAGCCGGGCAGCCAGAGCTCCGCTGCCAGCGACGACATAGAG ATAGTCGTCAACGTGGGGGGCGTGCGGCAGGTGCTGTACGGGGACCTCCTCAGTCAGTAC CCTGAGACCCGGCTGGCGGAGCTCATCAACTGCTTGGCTGGGGGCTACGACACCATCTTC TCCCTGTGCGACGACTACGACCCCGGCAAGCGCGAGTTCTACTTTGACAGGGACCCGGAC GCCTTCAAGTGTGTCATCGAGGTGTACTATTTCGGGGAGGTCCACATGAAGAAGGGCATC TGCCCCATCTGCTTCAAGAACGAGATGGACTTCTGGAAGGTGGACCTCAAGTTCCTGGAC GACTGTTGCAAGAGCCACCTGAGCGAGAAGCGCGAGGAGCTGGAGGAGATCGCGCGCCGC GTGCAGCTCATCCTGGACGACCTGGGCGTGGACGCGGCCGAGGGCCGCTGGCGCCGCTGC CAGAAGTGCGTCTGGAAGTTCCTGGAGAAGCCCGAGTCGTCGTGCCCGGCGCGGGTGGTG GCCGTGCTCTCCTTCCTGCTCATCCTCGTCTCGTCCGTGGTCATGTGCATGGGCACCATC CCCGAGCTGCAGGTGCTGGACGCCGAGGGCAACCGCGTGGAGCACCCGACGCTGGAGAAC GTGGAGACGGCGTGCATTGGCTGGTTCACCCTGGAGTACCTGCTGCGCCTCTTCTCGTCA CCCAACAAGCTGCACTTCGCGCTGTCCTTCATGAACATTGTGGACGTGCTGGCCATCCTC CCCTTCTACGTGAGCCTCACGCTCACGCACCTGGGTGCCCGCATGATGGAGCTGACCAAC GTGCAGCAGGCCGTGCAGGCGCTGCGGATCATGCGCATCGCGCGCATCTTCAAGCTGGCC CGCCACTCCTCGGGCCTGCAGACCCTCACCTATGCCCTCAAGCGCAGCTTCAAGGAACTG GGGCTGCTGCTCATGTACCTGGCAGTGGGTATCTTCGTCTTCTCTGCCCTGGGCTACACC ATGGAGCAGAGCCATCCAGAGACCCTGTTTAAGAGCATCCCCCAGTCCTTCTGGTGGGCC ATCATCACCATGACCACCGTCGGCTACGGCGACATCTACCCCAAGACCACGCTGGGCAAG CTCAACGCGGCCATCAGCTTCTTGTGTGGTGTCATCGCCATCGCCCTGCCCATCCACCCC ATCATCAACAACTTTGTCAGGTACTACAACAAGCAGCGCGTCCTGGAGACCGCGGCCAAG CACGAGCTGGAGCTGATGGAACTCAACTCCAGCAGCGGGGGCGAGGGCAAGACCGGGGGC TCCCGCAGTGACCTGGACAACCTCCCTCCAGAGCCTGCGGGGAAGGAGGCGCCGAGCTGC AGCAGCCGGCTGAAGCTCTCCCACAGCGACACCTTCATCCCCCTCCTGACCGAGGAGAAG CACCACAGGACCCGGCTCCAGAGTTGCAAGGTTTAAACGAATTCGAGCTCGGTACCCGGG GATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAA GGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTC TAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGT CCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCT CTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCA GCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCC TGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAG GTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGC AGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGAT GGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCA CAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCG GTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCG CGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACT GAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCT CACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACG CTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGC ACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTC GCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTC GTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGA TTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACC CGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGT ATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGA GCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTC AAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGC AAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAG GCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCC GACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGT TCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCT TTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGG CTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCT TGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGAT TAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGG CTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAA AAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGT TTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTC TACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATT ATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGG ATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGG GGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGC GCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATC GCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGT CTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGA GGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAA ACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGA AGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTG CCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT GTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTG CGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAA TTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTA TTTTTCTAAATACATTCAAATATGTATCCGCTCAT
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