SYT11 ORF clone FXC00398

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Flexi ORF Clone FXC00398

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Clone info.

Species

human

Clone Name

pF1KSDA0080 Sequence (with vector) Restriction Map

Product ID

FXC00398

HaloTag Clone PID

FHC00398

ORF Sequence

DNA sequence (1293 bp)
Protein sequence (431 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pF1KM Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB383738]

Gene

KIAA0080

Symbol

SYT11

Alias : SYT12, sytXI

Description

synaptotagmin XI

Original Clone ID

hh13320

Features of the cloned ORF sequence

Description

Length: 1293 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 431 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS1122.1 4.6e-165 99.8 SYT11 CCDS11922.1 8.2e-84 53.0 SYT4 CCDS74455.1 1.1e-42 42.0 SYT5 CCDS12919.1 7.7e-42 43.0 SYT5 CCDS76582.1 2.9e-41 39.7 SYT1 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001565 161 176 PR00399 Synaptotagmin IPR001565 176 189 PR00399 Synaptotagmin IPR001565 233 248 PR00399 Synaptotagmin IPR001565 253 263 PR00399 Synaptotagmin HMMPfam IPR000008 174 261 PF00168 C2 calcium-dependent membrane targeting IPR000008 309 396 PF00168 C2 calcium-dependent membrane targeting HMMSmart IPR000008 173 277 SM00239 C2 calcium-dependent membrane targeting IPR000008 307 423 SM00239 C2 calcium-dependent membrane targeting ProfileScan IPR018029 174 262 PS50004 C2 membrane targeting protein IPR018029 304 397 PS50004 C2 membrane targeting protein
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 16 VVAGLIGASVLVVCVSVTVFVWS 38 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_689493 431 608741 99.8 100.0 XP_016856248 434 608741 98.8 100.0 XP_005245071 430 608741 99.3 100.0 NP_065834 425 600103 53.0 99.8 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KSDA0080 Download

>KIAA0080  1293 bp
ATGGCTGAGATCACCAATATCCGACCTAGCTTTGATGTGTCACCGGTGGTGGCCGGCCTC
ATCGGGGCCTCTGTGCTGGTGGTGTGTGTCTCGGTGACCGTCTTTGTCTGGTCATGCTGC
CACCAGCAGGCAGAGAAGAAGCACAAGAACCCACCATACAAGTTTATTCACATGCTCAAA
GGCATCAGCATATACCCAGAGACCCTCAGCAACAAGAAGAAAATCATCAAAGTGCGGAGA
GACAAAGATGGTCCTGGGAGGGAAGGTGGACGTAGGAACCTGTTGGTGGACGCAGCAGAG
GCTGGCCTGCTAAGCCGAGACAAAGATCCCAGGGGGCCTAGCTCTGGATCTTGTATAGAC
CAATTACCCATCAAAATGGACTATGGGGAAGAACTAAGGAGCCCTATTACAAGCCTGACC
CCTGGGGAGAGCAAAACCACCTCTCCATCATCTCCAGAGGAGGATGTCATGCTAGGATCC
CTCACCTTCTCAGTGGACTATAACTTCCCGAAAAAAGCCCTGGTGGTGACAATCCAGGAG
GCCCACGGGCTGCCAGTGATGGATGACCAGACCCAGGGATCTGACCCCTACATCAAAATG
ACCATCCTTCCTGACAAACGGCATCGGGTGAAGACCAGAGTGCTGCGGAAGACCCTGGAC
CCTGTGTTTGACGAGACCTTCACCTTCTATGGCATCCCCTACAGCCAGCTGCAGGACCTG
GTGCTGCACTTCCTTGTCCTCAGCTTTGACCGCTTCTCTCGGGATGATGTCATTGGCGAG
GTCATGGTGCCACTGGCAGGGGTGGACCCCAGCACAGGCAAGGTACAACTGACCAGGGAC
ATCATCAAAAGGAATATCCAGAAGTGCATCAGCAGAGGGGAGCTCCAGGTGTCTCTGTCA
TATCAGCCTGTGGCACAGAGAATGACAGTGGTGGTCCTCAAAGCCAGACACTTGCCGAAG
ATGGATATCACCGGTCTCTCAGGTAATCCTTATGTCAAGGTGAACGTCTACTACGGCAGA
AAGCGCATTGCCAAGAAGAAAACCCATGTGAAGAAGTGCACTTTGAACCCCATCTTCAAT
GAATCTTTCATCTACGACATCCCCACTGACCTCCTGCCTGATATCAGCATCGAGTTCCTC
GTTATCGACTTCGATCGCACCACCAAGAATGAGGTGGTGGGGAGGCTGATCCTGGGGGCA
CACAGTGTCACAGCCAGTGGTGCTGAACACTGGAGAGAGGTCTGCGAGAGCCCCCGCAAG
CCTGTGGCCAAGTGGCACAGTCTGAGCGAGTAC

ORF Protein

Cloned ORF protein sequence for pF1KSDA0080 Download

>KIAA0080  431 aa
MAEITNIRPSFDVSPVVAGLIGASVLVVCVSVTVFVWSCCHQQAEKKHKNPPYKFIHMLK
GISIYPETLSNKKKIIKVRRDKDGPGREGGRRNLLVDAAEAGLLSRDKDPRGPSSGSCID
QLPIKMDYGEELRSPITSLTPGESKTTSPSSPEEDVMLGSLTFSVDYNFPKKALVVTIQE
AHGLPVMDDQTQGSDPYIKMTILPDKRHRVKTRVLRKTLDPVFDETFTFYGIPYSQLQDL
VLHFLVLSFDRFSRDDVIGEVMVPLAGVDPSTGKVQLTRDIIKRNIQKCISRGELQVSLS
YQPVAQRMTVVVLKARHLPKMDITGLSGNPYVKVNVYYGRKRIAKKKTHVKKCTLNPIFN
ESFIYDIPTDLLPDISIEFLVIDFDRTTKNEVVGRLILGAHSVTASGAEHWREVCESPRK
PVAKWHSLSEY

ORF+Vector

Nucleotide Sequence (with vector) for pF1KSDA0080 Download

>pF1KSDA0080  4432 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT
AGAACCATGGCTGAGATCACCAATATCCGACCTAGCTTTGATGTGTCACCGGTGGTGGCC
GGCCTCATCGGGGCCTCTGTGCTGGTGGTGTGTGTCTCGGTGACCGTCTTTGTCTGGTCA
TGCTGCCACCAGCAGGCAGAGAAGAAGCACAAGAACCCACCATACAAGTTTATTCACATG
CTCAAAGGCATCAGCATATACCCAGAGACCCTCAGCAACAAGAAGAAAATCATCAAAGTG
CGGAGAGACAAAGATGGTCCTGGGAGGGAAGGTGGACGTAGGAACCTGTTGGTGGACGCA
GCAGAGGCTGGCCTGCTAAGCCGAGACAAAGATCCCAGGGGGCCTAGCTCTGGATCTTGT
ATAGACCAATTACCCATCAAAATGGACTATGGGGAAGAACTAAGGAGCCCTATTACAAGC
CTGACCCCTGGGGAGAGCAAAACCACCTCTCCATCATCTCCAGAGGAGGATGTCATGCTA
GGATCCCTCACCTTCTCAGTGGACTATAACTTCCCGAAAAAAGCCCTGGTGGTGACAATC
CAGGAGGCCCACGGGCTGCCAGTGATGGATGACCAGACCCAGGGATCTGACCCCTACATC
AAAATGACCATCCTTCCTGACAAACGGCATCGGGTGAAGACCAGAGTGCTGCGGAAGACC
CTGGACCCTGTGTTTGACGAGACCTTCACCTTCTATGGCATCCCCTACAGCCAGCTGCAG
GACCTGGTGCTGCACTTCCTTGTCCTCAGCTTTGACCGCTTCTCTCGGGATGATGTCATT
GGCGAGGTCATGGTGCCACTGGCAGGGGTGGACCCCAGCACAGGCAAGGTACAACTGACC
AGGGACATCATCAAAAGGAATATCCAGAAGTGCATCAGCAGAGGGGAGCTCCAGGTGTCT
CTGTCATATCAGCCTGTGGCACAGAGAATGACAGTGGTGGTCCTCAAAGCCAGACACTTG
CCGAAGATGGATATCACCGGTCTCTCAGGTAATCCTTATGTCAAGGTGAACGTCTACTAC
GGCAGAAAGCGCATTGCCAAGAAGAAAACCCATGTGAAGAAGTGCACTTTGAACCCCATC
TTCAATGAATCTTTCATCTACGACATCCCCACTGACCTCCTGCCTGATATCAGCATCGAG
TTCCTCGTTATCGACTTCGATCGCACCACCAAGAATGAGGTGGTGGGGAGGCTGATCCTG
GGGGCACACAGTGTCACAGCCAGTGGTGCTGAACACTGGAGAGAGGTCTGCGAGAGCCCC
CGCAAGCCTGTGGCCAAGTGGCACAGTCTGAGCGAGTACTACGTAGTTTAAACGAATTCG
AGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGC
TAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATA
ACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATC
CGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCA
AGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGAC
ATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTA
GCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGG
GCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCA
AGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGC
ATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTC
GGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCA
GCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTG
CAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTG
CTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAG
GATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATG
CGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGC
ATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAA
GAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGAT
GGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAAT
GGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGAC
ATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTC
CTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTT
GACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGCGAAATGACCGACCAAGCGACGCCCAA
CCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCA
GGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTG
CTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGT
CAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCC
CTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCT
TCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTC
GTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTA
TCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCA
GCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAG
TGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAG
CCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGT
AGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAA
GATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGG
ATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAAT
ACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCT
TCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACG
GTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACC
TGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATG
GTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCAC
GATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGC
AGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGAC
CCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCAT
GCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGC
CTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGG
AGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATA
AACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCT
ACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTCAT