SCARA3 ORF clone FHC11923

KOP
KOP HaloTag ORF List Flexi search

Halotag ORF Clone FHC11923

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Clone info.

Species

human

Clone Name

pFN21AE1097 Sequence (with vector) Restriction Map

Product ID

FHC11923

Flexi Clone PID

FXC11923

ORF Sequence

DNA sequence (1818 bp)
Protein sequence (606 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pFN21A Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB587561]

Gene

KIEE1097

Symbol

SCARA3

Alias : APC7, CSR, CSR1, MSLR1, MSRL1

Description

scavenger receptor class A, member 3, transcript variant 1

Original Clone ID

cp00681

Quality control data of this clone

Description

Characterization of the cloned ORF

5'-end(FN21F1)

3'-end(F1KR)

Agarose gel electrophoretic image

5'/3'-end sequences (chromatogram)

N-terminal HaloTag-fusions expressed in HEK293 visualized by HaloTag TMR ligand

Cell image

SDS-PAGE

Features of the cloned ORF sequence

Description

Length: 1818 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 606 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS34871.1 2.8e-98 100.0 SCARA3 CCDS34870.1 2.1e-69 100.0 SCARA3 CCDS32782.1 1.6e-26 35.0 COLEC12 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR008160 456 511 PF01391 Collagen triple helix repeat IPR008160 500 557 PF01391 Collagen triple helix repeat IPR008160 544 602 PF01391 Collagen triple helix repeat
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 56 RILYLFLALLLVAVAVLASLVF 77 PRIMARY 22
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) XP_016869024 606 602728 100.0 100.0 NP_057324 606 602728 100.0 100.0 XP_016869026 483 602728 95.3 80.2 NP_569057 742 607621 35.0 96.5 XP_011524043 725 607621 35.6 93.6 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pFN21AE1097 Download

>KIEE1097  1818 bp
ATGAAAGTGAGGTCGGCCGGCGGCGATGGAGATGCCTTGTGCGTTACAGAAGAGGACCTG
GCGGGTGACGACGAGGACATGCCGACCTTCCCATGCACCCAGAAGGGCCGGCCAGGGCCC
CGCTGCAGCCGCTGCCAGAAGAACCTATCTTTGCACACATCGGTGCGGATTCTTTACCTC
TTCCTGGCCCTGCTCCTGGTGGCCGTGGCTGTGTTGGCCTCTCTGGTTTTCAGAAAAGTG
GACTCTCTCTCCGAAGACATCTCCTTGACCCAGTCTATTTATGACAAGAAGCTTGTGTTA
ATGCAGAAAAATCTCCAGGGCCTGGATCCGAAAGCCCTGAACAACTGCTCTTTCTGCCAT
GAAGCTGGGCAGCTGGGGCCAGAGATCCGAAAACTGCAGGAGGAGCTGGAGGGAATTCAG
AAGCTGCTTCTGGCCCAGGAGGTGCAGCTGGACCAGACCTTACAGGCCCAGGAGGTGCTC
TCCACCACCAGCAGACAAATCTCCCAGGAGATGGGCAGTTGCTCCTTCTCCATCCACCAG
GTTAACCAGTCTCTGGGGCTCTTCCTGGCCCAGGTGAGAGGCTGGCAGGCCACCACAGCT
GGCCTGGACCTCTCTCTGAAGGACCTCACCCAGGAGTGCTACGATGTCAAGGCTGCAGTG
CACCAGATCAACTTCACCGTGGGGCAGACTTCCGAGTGGATCCACGGGATCCAGCGGAAG
ACAGACGAGGAGACCCTGACCCTCCAGAAGATTGTCACCGACTGGCAGAACTACACACGG
CTCTTCAGCGGCCTGCGCACCACCTCCACCAAGACTGGAGAGGCGGTCAAGAACATCCAG
GCCACCCTGGGGGCCTCCTCACAGCGCATCAGCCAGAACTCAGAGAGCATGCACGACCTG
GTACTCCAGGTCATGGGCTTGCAGCTGCAGCTGGATAACATCTCGTCCTTCCTGGATGAC
CACGAAGAGAACATGCATGATCTTCAGTACCATACCCACTACGCCCAGAACCGCACTGTG
GAGAGGTTTGAGTCTCTGGAAGGACGCATGGCTTCTCACGAGATTGAAATTGGCACCATC
TTCACCAACATCAATGCCACCGACAACCACGTGCACAGCATGCTCAAGTACCTGGATGAC
GTGCGGCTCTCCTGCACGCTGGGCTTCCACACCCATGCCGAGGAGCTCTACTACCTGAAC
AAGTCTGTCTCCATCATGCTGGGCACCACAGACCTGCTCCGGGAGCGCTTCAGCCTGCTC
AGTGCCCGGCTGGACCTCAACGTCCGGAACCTCTCCATGATCGTGGAGGAGATGAAGGCA
GTGGACACACAGCATGGAGAAATCCTTCGCAATGTCACCATCCTACGAGGTGCCCCCGGC
CCTCCAGGACCAAGAGGATTCAAAGGAGATATGGGCGTGAAAGGGCCTGTTGGCGGCAGA
GGCCCGAAAGGAGACCCCGGCAGCTTGGGCCCCCTGGGACCCCAGGGTCCTCAGGGGCAA
CCTGGAGAGGCCGGGCCTGTGGGAGAAAGGGGCCCTGTTGGCCCTCGAGGGTTCCCAGGC
CTCAAAGGCTCAAAGGGCAGCTTTGGAACTGGAGGGCCGAGAGGACAGCCAGGCCCAAAA
GGGGACATAGGGCCCCCAGGGCCAGAAGGGCCCCCGGGGTCTCCAGGGCCCTCAGGGCCT
CAGGGAAAACCGGGAATTGCAGGGAAGACAGGGTCACCAGGCCAGCGGGGGGCCATGGGG
CCTAAGGGTGAACCAGGGATCCAGGGTCCCCCTGGTCTCCCGGGGCCTCCAGGTCCACCA
GGAAGCCAGAGCTTCTAC

ORF Protein

Cloned ORF protein sequence for pFN21AE1097 Download

>KIEE1097  606 aa
MKVRSAGGDGDALCVTEEDLAGDDEDMPTFPCTQKGRPGPRCSRCQKNLSLHTSVRILYL
FLALLLVAVAVLASLVFRKVDSLSEDISLTQSIYDKKLVLMQKNLQGLDPKALNNCSFCH
EAGQLGPEIRKLQEELEGIQKLLLAQEVQLDQTLQAQEVLSTTSRQISQEMGSCSFSIHQ
VNQSLGLFLAQVRGWQATTAGLDLSLKDLTQECYDVKAAVHQINFTVGQTSEWIHGIQRK
TDEETLTLQKIVTDWQNYTRLFSGLRTTSTKTGEAVKNIQATLGASSQRISQNSESMHDL
VLQVMGLQLQLDNISSFLDDHEENMHDLQYHTHYAQNRTVERFESLEGRMASHEIEIGTI
FTNINATDNHVHSMLKYLDDVRLSCTLGFHTHAEELYYLNKSVSIMLGTTDLLRERFSLL
SARLDLNVRNLSMIVEEMKAVDTQHGEILRNVTILRGAPGPPGPRGFKGDMGVKGPVGGR
GPKGDPGSLGPLGPQGPQGQPGEAGPVGERGPVGPRGFPGLKGSKGSFGTGGPRGQPGPK
GDIGPPGPEGPPGSPGPSGPQGKPGIAGKTGSPGQRGAMGPKGEPGIQGPPGLPGPPGPP
GSQSFY

ORF+Vector

Nucleotide Sequence (with vector) for pFN21AE1097 Download

>pFN21AE1097  6523 bp
TCAATATTGGCCATTAGCCATATTATTCATTGGTTATATAGCATAAATCAATATTGGCTA
TTGGCCATTGCATACGTTGTATCTATATCATAATATGTACATTTATATTGGCTCATGTCC
AATATGACCGCCATGTTGGCATTGATTATTGACTAGTTATTAATAGTAATCAATTACGGG
GTCATTAGTTCATAGCCCATATATGGAGTTCCGCGTTACATAACTTACGGTAAATGGCCC
GCCTGGCTGACCGCCCAACGACCCCCGCCCATTGACGTCAATAATGACGTATGTTCCCAT
AGTAACGCCAATAGGGACTTTCCATTGACGTCAATGGGTGGAGTATTTACGGTAAACTGC
CCACTTGGCAGTACATCAAGTGTATCATATGCCAAGTCCGCCCCCTATTGACGTCAATGA
CGGTAAATGGCCCGCCTGGCATTATGCCCAGTACATGACCTTACGGGACTTTCCTACTTG
GCAGTACATCTACGTATTAGTCATCGCTATTACCATGGTGATGCGGTTTTGGCAGTACAC
CAATGGGCGTGGATAGCGGTTTGACTCACGGGGATTTCCAAGTCTCCACCCCATTGACGT
CAATGGGAGTTTGTTTTGGCACCAAAATCAACGGGACTTTCCAAAATGTCGTAATAACCC
CGCCCCGTTGACGCAAATGGGCGGTAGGCGTGTACGGTGGGAGGTCTATATAAGCAGAGC
TGGTTTAGTGAACCGTCAGATCACTAGAAGCTTTATTGCGGTAGTTTATCACAGTTAAAT
TGCTAACGCAGTCAGTGCTTCTGACACAACAGTCTCGAACTTAAGCTGCAGAAGTTGGTC
GTGAGGCACTGGGCAGGTAAGTATCAAGGTTACAAGACAGGTTTAAGGAGACCAATAGAA
ACTGGGCTTGTCGAGACAGAGAAGACTCTTGCGTTTCTGATAGGCACCTATTGGTCTTAC
TGACATCCACTTTGCCTTTCTCTCCACAGGTGTCCACTCCCAGTTCAATTACAGCTCTTA
AGGCTAGAGTATTAATACGACTCACTATAGGGCTAGCAAAGCCACCATGGCAGAAATCGG
TACTGGCTTTCCATTCGACCCCCATTATGTGGAAGTCCTGGGCGAGCGCATGCACTACGT
CGATGTTGGTCCGCGCGATGGCACCCCTGTGCTGTTCCTGCACGGTAACCCGACCTCCTC
CTACGTGTGGCGCAACATCATCCCGCATGTTGCACCGACCCATCGCTGCATTGCTCCAGA
CCTGATCGGTATGGGCAAATCCGACAAACCAGACCTGGGTTATTTCTTCGACGACCACGT
CCGCTTCATGGATGCCTTCATCGAAGCCCTGGGTCTGGAAGAGGTCGTCCTGGTCATTCA
CGACTGGGGCTCCGCTCTGGGTTTCCACTGGGCCAAGCGCAATCCAGAGCGCGTCAAAGG
TATTGCATTTATGGAGTTCATCCGCCCTATCCCGACCTGGGACGAATGGCCAGAATTTGC
CCGCGAGACCTTCCAGGCCTTCCGCACCACCGACGTCGGCCGCAAGCTGATCATCGATCA
GAACGTTTTTATCGAGGGTACGCTGCCGATGGGTGTCGTCCGCCCGCTGACTGAAGTCGA
GATGGACCATTACCGCGAGCCGTTCCTGAATCCTGTTGACCGCGAGCCACTGTGGCGCTT
CCCAAACGAGCTGCCAATCGCCGGTGAGCCAGCGAACATCGTCGCGCTGGTCGAAGAATA
CATGGACTGGCTGCACCAGTCCCCTGTCCCGAAGCTGCTGTTCTGGGGCACCCCAGGCGT
TCTGATCCCACCGGCCGAAGCCGCTCGCCTGGCCAAAAGCCTGCCTAACTGCAAGGCTGT
GGACATCGGCCCGGGTCTGAATCTGCTGCAAGAAGACAACCCGGACCTGATCGGCAGCGA
GATCGCGCGCTGGCTGTCGACGCTCGAGATTTCCGGCGAGCCAACCACTGAGGATCTGTA
CTTTCAGAGCGATAACGCGATCGCCATGAAAGTGAGGTCGGCCGGCGGCGATGGAGATGC
CTTGTGCGTTACAGAAGAGGACCTGGCGGGTGACGACGAGGACATGCCGACCTTCCCATG
CACCCAGAAGGGCCGGCCAGGGCCCCGCTGCAGCCGCTGCCAGAAGAACCTATCTTTGCA
CACATCGGTGCGGATTCTTTACCTCTTCCTGGCCCTGCTCCTGGTGGCCGTGGCTGTGTT
GGCCTCTCTGGTTTTCAGAAAAGTGGACTCTCTCTCCGAAGACATCTCCTTGACCCAGTC
TATTTATGACAAGAAGCTTGTGTTAATGCAGAAAAATCTCCAGGGCCTGGATCCGAAAGC
CCTGAACAACTGCTCTTTCTGCCATGAAGCTGGGCAGCTGGGGCCAGAGATCCGAAAACT
GCAGGAGGAGCTGGAGGGAATTCAGAAGCTGCTTCTGGCCCAGGAGGTGCAGCTGGACCA
GACCTTACAGGCCCAGGAGGTGCTCTCCACCACCAGCAGACAAATCTCCCAGGAGATGGG
CAGTTGCTCCTTCTCCATCCACCAGGTTAACCAGTCTCTGGGGCTCTTCCTGGCCCAGGT
GAGAGGCTGGCAGGCCACCACAGCTGGCCTGGACCTCTCTCTGAAGGACCTCACCCAGGA
GTGCTACGATGTCAAGGCTGCAGTGCACCAGATCAACTTCACCGTGGGGCAGACTTCCGA
GTGGATCCACGGGATCCAGCGGAAGACAGACGAGGAGACCCTGACCCTCCAGAAGATTGT
CACCGACTGGCAGAACTACACACGGCTCTTCAGCGGCCTGCGCACCACCTCCACCAAGAC
TGGAGAGGCGGTCAAGAACATCCAGGCCACCCTGGGGGCCTCCTCACAGCGCATCAGCCA
GAACTCAGAGAGCATGCACGACCTGGTACTCCAGGTCATGGGCTTGCAGCTGCAGCTGGA
TAACATCTCGTCCTTCCTGGATGACCACGAAGAGAACATGCATGATCTTCAGTACCATAC
CCACTACGCCCAGAACCGCACTGTGGAGAGGTTTGAGTCTCTGGAAGGACGCATGGCTTC
TCACGAGATTGAAATTGGCACCATCTTCACCAACATCAATGCCACCGACAACCACGTGCA
CAGCATGCTCAAGTACCTGGATGACGTGCGGCTCTCCTGCACGCTGGGCTTCCACACCCA
TGCCGAGGAGCTCTACTACCTGAACAAGTCTGTCTCCATCATGCTGGGCACCACAGACCT
GCTCCGGGAGCGCTTCAGCCTGCTCAGTGCCCGGCTGGACCTCAACGTCCGGAACCTCTC
CATGATCGTGGAGGAGATGAAGGCAGTGGACACACAGCATGGAGAAATCCTTCGCAATGT
CACCATCCTACGAGGTGCCCCCGGCCCTCCAGGACCAAGAGGATTCAAAGGAGATATGGG
CGTGAAAGGGCCTGTTGGCGGCAGAGGCCCGAAAGGAGACCCCGGCAGCTTGGGCCCCCT
GGGACCCCAGGGTCCTCAGGGGCAACCTGGAGAGGCCGGGCCTGTGGGAGAAAGGGGCCC
TGTTGGCCCTCGAGGGTTCCCAGGCCTCAAAGGCTCAAAGGGCAGCTTTGGAACTGGAGG
GCCGAGAGGACAGCCAGGCCCAAAAGGGGACATAGGGCCCCCAGGGCCAGAAGGGCCCCC
GGGGTCTCCAGGGCCCTCAGGGCCTCAGGGAAAACCGGGAATTGCAGGGAAGACAGGGTC
ACCAGGCCAGCGGGGGGCCATGGGGCCTAAGGGTGAACCAGGGATCCAGGGTCCCCCTGG
TCTCCCGGGGCCTCCAGGTCCACCAGGAAGCCAGAGCTTCTACGTTTAAACGAATTCGGG
CTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTA
ACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAAC
CCCTTGGGGCGGCCGCTTCGAGCAGACATGATAAGATACATTGATGAGTTTGGACAAACC
ACAACTAGAATGCAGTGAAAAAAATGCTTTATTTGTGAAATTTGTGATGCTATTGCTTTA
TTTGTAACCATTATAAGCTGCAATAAACAAGTTAACAACAACAATTGCATTCATTTTATG
TTTCAGGTTCAGGGGGAGATGTGGGAGGTTTTTTTAAGCAAGTAAAACCTCTACAAATGT
GGTAAAATCGAATTCTAATGGATCCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCC
CAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTAATG
GTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTTTA
TTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGCTT
CAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTCCC
TTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAAAA
GATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCGGT
AAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTCAAAGTT
CTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCCGC
ATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTACG
GATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTGCG
GCCAACTTACTTCTGACAACTATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACAAC
ATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATACCA
AACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTA
ACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGGAT
AAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATAAA
TCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTAAG
CCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAAAT
AGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAATTCGAAATGACCGAC
CAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCACAGAAT
CAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAACCGTA
AAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCACAAAA
ATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGCGTTTC
CCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATACCTGT
CCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTATCTCA
GTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCAGCCCG
ACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGACTTAT
CGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGGTGCTA
CAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGGTATCT
GCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGGCAAAC
AAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAGAAAAA
AAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAACGAAA
ACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGATCCTTT
TATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCAT
GAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCA
TAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTG
TTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACA
ATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGC
AGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCT