DDX21 ORF clone FXC11616

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Flexi ORF Clone FXC11616

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Clone info.

Species

human

Clone Name

pF1KB3472 Sequence (with vector) Restriction Map

Product ID

FXC11616

HaloTag Clone PID

FHC11616

ORF Sequence

DNA sequence (2349 bp)
Protein sequence (783 aa)

Linker Type

Flexi type

more Linker info

Vector Type

pF1KOF Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB527408]

Gene

KIBB3472

Symbol

DDX21

Alias : GUA, GURDB, RH-II/GU, RH-II/GuA

Description

DEAD (Asp-Glu-Ala-Asp) box helicase 21, transcript variant 1

Original Clone ID

ha03224

Features of the cloned ORF sequence

Description

Length: 2349 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 783 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS31211.1 6e-167 100.0 DDX21 CCDS73144.1 1e-152 100.0 DDX21 CCDS7283.1 1.2e-84 60.7 DDX50 CCDS33646.1 2.3e-19 30.2 DDX17 CCDS46706.1 2.3e-19 30.2 DDX17 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition HMMPfam IPR011545 210 380 PF00270 DNA/RNA helicase IPR001650 464 532 PF00271 Helicase IPR012562 620 715 PF08152 GUCT HMMSmart IPR014001 205 412 SM00487 DEAD-like helicase IPR001650 448 532 SM00490 Helicase ProfileScan IPR014014 186 214 PS51195 RNA helicase IPR014001 217 396 PS51192 DEAD-like helicase IPR001650 429 573 PS51194 Helicase
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_004719 783 606357 100.0 100.0 NP_001243839 715 606357 100.0 91.3 XP_011538638 729 606357 93.1 100.0 NP_076950 737 610373 60.7 88.9 XP_016872115 737 610373 60.7 88.9 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KB3472 Download

>KIBB3472  2349 bp
ATGCCGGGAAAACTCCGTAGTGACGCTGGTTTGGAATCAGACACCGCAATGAAAAAAGGG
GAGACACTGCGAAAGCAAACCGAGGAGAAAGAGAAAAAAGAGAAGCCAAAATCTGATAAG
ACTGAAGAGATAGCAGAAGAGGAAGAAACTGTTTTCCCCAAAGCTAAACAAGTTAAAAAG
AAAGCAGAGCCTTCTGAAGTTGACATGAATTCTCCTAAATCCAAAAAGGCAAAAAAGAAA
GAGGAGCCATCTCAAAATGACATTTCTCCTAAAACCAAAAGTTTGAGAAAGAAAAAGGAG
CCCATTGAAAAGAAAGTGGTTTCTTCTAAAACCAAAAAAGTGACAAAAAATGAGGAGCCT
TCTGAGGAAGAAATAGATGCTCCTAAGCCCAAGAAGATGAAGAAAGAAAAGGAAATGAAT
GGAGAAACTAGAGAGAAAAGCCCCAAACTGAAGAATGGATTTCCTCATCCTGAACCGGAC
TGTAACCCCAGTGAAGCTGCCAGTGAAGAAAGTAACAGTGAGATAGAGCAGGAAATACCT
GTGGAACAAAAAGAAGGCGCTTTCTCTAATTTTCCCATATCTGAAGAAACTATTAAACTT
CTCAAAGGCCGAGGAGTGACCTTCCTATTTCCTATACAAGCAAAGACATTCCATCATGTT
TACAGCGGGAAGGACTTAATTGCACAGGCACGGACAGGAACTGGGAAGACATTCTCCTTT
GCCATCCCTTTGATTGAGAAACTTCATGGGGAACTGCAAGACAGGAAGAGAGGCCGTGCC
CCTCAGGTACTGGTTCTTGCACCTACAAGAGAGTTGGCAAATCAAGTAAGCAAAGACTTC
AGTGACATCACAAAAAAGCTGTCAGTGGCTTGTTTTTATGGTGGAACTCCCTATGGAGGT
CAATTTGAACGCATGAGGAATGGGATTGATATCCTGGTTGGAACACCAGGTCGTATCAAA
GACCACATACAGAATGGCAAACTAGATCTCACCAAACTTAAGCATGTTGTCCTGGATGAA
GTGGACCAGATGTTGGATATGGGATTTGCTGATCAAGTGGAAGAGATTTTAAGTGTGGCA
TACAAGAAAGATTCTGAAGACAATCCCCAAACATTGCTTTTTTCTGCAACTTGCCCTCAT
TGGGTATTTAATGTTGCCAAGAAATACATGAAATCTACATATGAACAGGTGGACCTGATT
GGTAAAAAGACTCAGAAAACGGCAATAACTGTGGAGCATCTGGCTATTAAGTGCCACTGG
ACTCAGAGGGCAGCAGTTATTGGGGATGTCATCCGAGTATATAGTGGTCATCAAGGACGC
ACTATCATCTTTTGTGAAACCAAGAAAGAAGCCCAGGAGCTGTCCCAGAATTCAGCTATA
AAGCAGGATGCTCAGTCCTTGCATGGAGACATTCCACAGAAGCAAAGGGAAATCACCCTG
AAAGGTTTTAGAAATGGTAGTTTTGGAGTTTTGGTGGCAACCAATGTTGCTGCACGTGGG
TTAGACATCCCTGAGGTTGATTTGGTTATACAAAGCTCTCCACCAAAGGATGTAGAGTCC
TACATTCATCGATCCGGGCGGACAGGCAGAGCTGGAAGGACGGGGGTGTGCATCTGCTTT
TATCAGCACAAGGAAGAATATCAGTTAGTACAAGTGGAGCAAAAAGCGGGAATTAAGTTC
AAACGAATAGGTGTTCCTTCTGCAACAGAAATAATAAAAGCTTCCAGCAAAGATGCCATC
AGGCTTTTGGATTCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATCAGCTGAGAAG
CTGATAGAGGAGAAGGGAGCTGTGGAAGCTCTGGCAGCAGCACTGGCCCATATTTCAGGT
GCCACGTCCGTAGACCAGCGCTCCTTGATCAACTCAAATGTGGGTTTTGTGACCATGATC
TTGCAGTGCTCAATTGAAATGCCAAATATTAGTTATGCTTGGAAAGAACTTAAAGAGCAG
CTGGGCGAGGAGATTGATTCCAAAGTGAAGGGAATGGTTTTTCTCAAAGGAAAGCTGGGT
GTTTGCTTTGATGTACCTACCGCATCAGTAACAGAAATACAGGAGAAATGGCATGATTCA
CGACGCTGGCAGCTCTCTGTGGCCACAGAGCAACCAGAACTGGAAGGACCACGGGAAGGA
TATGGAGGCTTCAGGGGACAGCGGGAAGGCAGTCGAGGCTTCAGGGGACAGCGGGACGGA
AACAGAAGATTCAGAGGACAGCGGGAAGGCAGTAGAGGCCCGAGAGGACAGCGATCAGGA
GGTGGCAACAAAAGTAACAGATCCCAAAACAAAGGCCAGAAGCGGAGTTTCAGTAAAGCA
TTTGGTCAA

ORF Protein

Cloned ORF protein sequence for pF1KB3472 Download

>KIBB3472  783 aa
MPGKLRSDAGLESDTAMKKGETLRKQTEEKEKKEKPKSDKTEEIAEEEETVFPKAKQVKK
KAEPSEVDMNSPKSKKAKKKEEPSQNDISPKTKSLRKKKEPIEKKVVSSKTKKVTKNEEP
SEEEIDAPKPKKMKKEKEMNGETREKSPKLKNGFPHPEPDCNPSEAASEESNSEIEQEIP
VEQKEGAFSNFPISEETIKLLKGRGVTFLFPIQAKTFHHVYSGKDLIAQARTGTGKTFSF
AIPLIEKLHGELQDRKRGRAPQVLVLAPTRELANQVSKDFSDITKKLSVACFYGGTPYGG
QFERMRNGIDILVGTPGRIKDHIQNGKLDLTKLKHVVLDEVDQMLDMGFADQVEEILSVA
YKKDSEDNPQTLLFSATCPHWVFNVAKKYMKSTYEQVDLIGKKTQKTAITVEHLAIKCHW
TQRAAVIGDVIRVYSGHQGRTIIFCETKKEAQELSQNSAIKQDAQSLHGDIPQKQREITL
KGFRNGSFGVLVATNVAARGLDIPEVDLVIQSSPPKDVESYIHRSGRTGRAGRTGVCICF
YQHKEEYQLVQVEQKAGIKFKRIGVPSATEIIKASSKDAIRLLDSVPPTAISHFKQSAEK
LIEEKGAVEALAAALAHISGATSVDQRSLINSNVGFVTMILQCSIEMPNISYAWKELKEQ
LGEEIDSKVKGMVFLKGKLGVCFDVPTASVTEIQEKWHDSRRWQLSVATEQPELEGPREG
YGGFRGQREGSRGFRGQRDGNRRFRGQREGSRGPRGQRSGGGNKSNRSQNKGQKRSFSKA
FGQ

ORF+Vector

Nucleotide Sequence (with vector) for pF1KB3472 Download

>pF1KB3472  5462 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGCCGGGAAAA
CTCCGTAGTGACGCTGGTTTGGAATCAGACACCGCAATGAAAAAAGGGGAGACACTGCGA
AAGCAAACCGAGGAGAAAGAGAAAAAAGAGAAGCCAAAATCTGATAAGACTGAAGAGATA
GCAGAAGAGGAAGAAACTGTTTTCCCCAAAGCTAAACAAGTTAAAAAGAAAGCAGAGCCT
TCTGAAGTTGACATGAATTCTCCTAAATCCAAAAAGGCAAAAAAGAAAGAGGAGCCATCT
CAAAATGACATTTCTCCTAAAACCAAAAGTTTGAGAAAGAAAAAGGAGCCCATTGAAAAG
AAAGTGGTTTCTTCTAAAACCAAAAAAGTGACAAAAAATGAGGAGCCTTCTGAGGAAGAA
ATAGATGCTCCTAAGCCCAAGAAGATGAAGAAAGAAAAGGAAATGAATGGAGAAACTAGA
GAGAAAAGCCCCAAACTGAAGAATGGATTTCCTCATCCTGAACCGGACTGTAACCCCAGT
GAAGCTGCCAGTGAAGAAAGTAACAGTGAGATAGAGCAGGAAATACCTGTGGAACAAAAA
GAAGGCGCTTTCTCTAATTTTCCCATATCTGAAGAAACTATTAAACTTCTCAAAGGCCGA
GGAGTGACCTTCCTATTTCCTATACAAGCAAAGACATTCCATCATGTTTACAGCGGGAAG
GACTTAATTGCACAGGCACGGACAGGAACTGGGAAGACATTCTCCTTTGCCATCCCTTTG
ATTGAGAAACTTCATGGGGAACTGCAAGACAGGAAGAGAGGCCGTGCCCCTCAGGTACTG
GTTCTTGCACCTACAAGAGAGTTGGCAAATCAAGTAAGCAAAGACTTCAGTGACATCACA
AAAAAGCTGTCAGTGGCTTGTTTTTATGGTGGAACTCCCTATGGAGGTCAATTTGAACGC
ATGAGGAATGGGATTGATATCCTGGTTGGAACACCAGGTCGTATCAAAGACCACATACAG
AATGGCAAACTAGATCTCACCAAACTTAAGCATGTTGTCCTGGATGAAGTGGACCAGATG
TTGGATATGGGATTTGCTGATCAAGTGGAAGAGATTTTAAGTGTGGCATACAAGAAAGAT
TCTGAAGACAATCCCCAAACATTGCTTTTTTCTGCAACTTGCCCTCATTGGGTATTTAAT
GTTGCCAAGAAATACATGAAATCTACATATGAACAGGTGGACCTGATTGGTAAAAAGACT
CAGAAAACGGCAATAACTGTGGAGCATCTGGCTATTAAGTGCCACTGGACTCAGAGGGCA
GCAGTTATTGGGGATGTCATCCGAGTATATAGTGGTCATCAAGGACGCACTATCATCTTT
TGTGAAACCAAGAAAGAAGCCCAGGAGCTGTCCCAGAATTCAGCTATAAAGCAGGATGCT
CAGTCCTTGCATGGAGACATTCCACAGAAGCAAAGGGAAATCACCCTGAAAGGTTTTAGA
AATGGTAGTTTTGGAGTTTTGGTGGCAACCAATGTTGCTGCACGTGGGTTAGACATCCCT
GAGGTTGATTTGGTTATACAAAGCTCTCCACCAAAGGATGTAGAGTCCTACATTCATCGA
TCCGGGCGGACAGGCAGAGCTGGAAGGACGGGGGTGTGCATCTGCTTTTATCAGCACAAG
GAAGAATATCAGTTAGTACAAGTGGAGCAAAAAGCGGGAATTAAGTTCAAACGAATAGGT
GTTCCTTCTGCAACAGAAATAATAAAAGCTTCCAGCAAAGATGCCATCAGGCTTTTGGAT
TCCGTGCCTCCCACTGCCATTAGTCACTTCAAACAATCAGCTGAGAAGCTGATAGAGGAG
AAGGGAGCTGTGGAAGCTCTGGCAGCAGCACTGGCCCATATTTCAGGTGCCACGTCCGTA
GACCAGCGCTCCTTGATCAACTCAAATGTGGGTTTTGTGACCATGATCTTGCAGTGCTCA
ATTGAAATGCCAAATATTAGTTATGCTTGGAAAGAACTTAAAGAGCAGCTGGGCGAGGAG
ATTGATTCCAAAGTGAAGGGAATGGTTTTTCTCAAAGGAAAGCTGGGTGTTTGCTTTGAT
GTACCTACCGCATCAGTAACAGAAATACAGGAGAAATGGCATGATTCACGACGCTGGCAG
CTCTCTGTGGCCACAGAGCAACCAGAACTGGAAGGACCACGGGAAGGATATGGAGGCTTC
AGGGGACAGCGGGAAGGCAGTCGAGGCTTCAGGGGACAGCGGGACGGAAACAGAAGATTC
AGAGGACAGCGGGAAGGCAGTAGAGGCCCGAGAGGACAGCGATCAGGAGGTGGCAACAAA
AGTAACAGATCCCAAAACAAAGGCCAGAAGCGGAGTTTCAGTAAAGCATTTGGTCAAGTT
TAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTAGAGTCGACCTGCAGGCATGCAAGC
TGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCA
ATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGG
AGGAACTATATCCGGTTCGCTTGCTGTCCATAAAACCGCCCAGTCTAGCTATCGCCATGT
AAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGC
CCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTTCTGCGGACTGGCTTTCTACGTGTT
CCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAA
TTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAGCCCTGCAAAGTAAACTGGATGGCT
TTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCAAGATCTGATCAAGAGACAGGATGA
CGGTCGTTTCGCATGCTTGAACAAGATGGATTGCACGCAGGTTCTCCGGCCGCTTGGGTG
GAGAGGCTATTCGGCTATGACTGGGCACAACAGACAATCGGCTGCTCTGATGCCGCCGTG
TTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTTGTCAAGACCGACCTGTCCGGTGCC
CTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCGTGGCTGGCCACGACGGGCGTTCCT
TGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGAAGGGACTGGCTGCTATTGGGCGAA
GTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCTCCTGCCGAGAAAGTATCCATCATG
GCTGATGCAATGCGGCGGCTGCATACGCTTGATCCGGCTACCTGCCCATTCGACCACCAA
GCGAAACATCGCATCGAGCGAGCACGCACTCGGATGGAAGCCGGTCTTGTCGATCAGGAT
GATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCG
CGTATGCCGGATGGTGAGGATCTCGTCGTGACTCATGGCGATGCCTGCTTGCCGAATATC
ATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGACTGTGGCCGGCTGGGTGTGGCGGAC
CGCTATCAGGACATAGCGTTGGCTACCCGTGATATTGCTGAAGAGCTTGGCGGCGAATGG
GCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCTCCCGATTCGCAGCGCATCGCCTTC
TATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTCTGGGGTTCGAAATGACCGACCAAG
CGACGCCCAACCGGACTATAAAAGGATCTAGGTGAAGATCCTTTTTGATAATCTCATGAC
CAAAATCCCTTAACGTGAGTTTTCGTTCCACTGAGCGTCAGACCCCGTAGAAAAGATCAA
AGGATCTTCTTGAAATCCTTTTTTTCTGCGCGTAATCTGCTGCTTGCAAACAAAAAAACC
ACCGCTACCAGCGGTGGTTTGTTTGCCGGATCAAGAGCTACCAACTCTTTTTCCGAAGGT
AACTGGCTTCAGCAGAGCGCAGATACCAAATACTGTCCTTCTAGTGTAGCCGTAGTTAGG
CCACCACTTCAAGAACTCTGTAGCACCGCCTACATACCTCGCTCTGCTAATCCTGTTACC
AGTGGCTGCTGCCAGTGGCGATAAGTCGTGTCTTACCGGGTTGGACTCAAGACGATAGTT
ACCGGATAAGGCGCAGCGGTCGGGCTGAACGGGGGGTTCGTGCACACAGCCCAGCTTGGA
GCGAACGACCTACACCGAACTGAGATACCTACAGCGTGAGCTATGAGAAAGCGCCACGCT
TCCCGAAGGGAGAAAGGCGGACAGGTATCCGGTAAGCGGCAGGGTCGGAACAGGAGAGCG
CACGAGGGAGCTTCCAGGGGGAAACGCCTGGTATCTTTATAGTCCTGTCGGGTTTCGCCA
CCTCTGACTTGAGCGTCGATTTTTGTGATGCTCGTCAGGGGGGCGGAGCCTATGGAAAAA
CGCCAGCAACGCGGCCTTTTTACGGTTCCTGGCCTTTTGCTGGCCTTTTGCTCACATGTT
CTTTCCTGCGTTATCCCCTGATTCTGTGGATAACCGTATTACCGCCTTTGAGTGAGCTGA
TACCGGAAATACAGGAACGCACGCTGGATGGCCCTTCGCTGGGATGGTGAAACCATGAAA
AATGGCAGCTTCAGTGGATTAAGTGGGGGTAATGTGGCCTGTACCCTCTGGTTGCATAGG
TATTCATACGGTTAAAATTTATCAGGCGCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGC
CATTTTTACCTGTCTGCTGCCGTGATCGCGCTGAACGCGTTTTAGCGGTGCGTACAATTA
AGGGATTATGGTAAATCCACTTACTGTCTGCCCTCGTAGCCATCGAGATAAACCGCAGTA
CTCCGGCCACGATGCGTCCGGCGTAGAGGATCGAGATCTTTTCAGCCTGATACAGATTAA
ATCAGAACGCAGAAGCGGTCTGATAAAACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGT
CCCACCTGACCCCATGCCGAACTCAGAAGTGAAACGCCGTAGCGCCGATGGTAGTGTGGG
GTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGA
AAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAA
ATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGAC
GCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGAAGGCCATCCTGACGGATGGCCTTT
TTGCGTTTCTACAAACTCTTTTGTTTATTTTTCTAAATACATTCAAATATGTATCCGCTC
AT