-
SpecieshumanProduct IDFXC06289Cloning SiteSgfI-PmeIGeneKIEE0379SymbolPCDHB6
Alias : PCDH-BETA6Descriptionprotocadherin beta 6, transcript variant 1Original Clone IDoc01079
Length: 2382 bp
Restriction map A
Restriction map B
Genomic Structure
-
Length: 794 aa
Result of homology search against CCDS protein database (
FASTA output,
Multiple alignment)
Entry Exp ID% symbol CCDS4248.1 0 99.9 PCDHB6 CCDS78067.1 0 99.8 PCDHB6 CCDS4247.1 0 78.6 PCDHB5 CCDS4245.1 0 77.9 PCDHB3 CCDS4246.1 0 77.7 PCDHB4
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)
[ zoom out (x2) ]
Result of InterProScan
Search method interpro_ID From To Entry Definition FPrintScan IPR002126 72 91 PR00205 Cadherin IPR002126 241 270 PR00205 Cadherin IPR002126 312 324 PR00205 Cadherin IPR002126 324 343 PR00205 Cadherin IPR002126 447 460 PR00205 Cadherin IPR002126 507 533 PR00205 Cadherin IPR002126 541 558 PR00205 Cadherin HMMPfam IPR013164 29 111 PF08266 Cadherin IPR002126 153 232 PF00028 Cadherin IPR002126 246 335 PF00028 Cadherin IPR002126 354 439 PF00028 Cadherin IPR002126 454 549 PF00028 Cadherin IPR002126 578 659 PF00028 Cadherin HMMSmart IPR002126 53 130 SM00112 Cadherin IPR002126 154 239 SM00112 Cadherin IPR002126 263 343 SM00112 Cadherin IPR002126 366 447 SM00112 Cadherin IPR002126 471 557 SM00112 Cadherin IPR002126 587 668 SM00112 Cadherin ProfileScan IPR002126 133 241 PS50268 Cadherin IPR002126 242 345 PS50268 Cadherin IPR002126 346 449 PS50268 Cadherin IPR002126 450 559 PS50268 Cadherin IPR002126 574 669 PS50268 Cadherin
Prediction of transmembrane (TM) segments
Method No. N terminal transmembrane region C terminal type length SOSUI2 1 12 QVAFFILLMLWGEVGSESIQYSV 34 SECONDARY 23 2 687 YLVVALASVSSLFLFSVLLFVAV 709 PRIMARY 23
Result of homology search against disease genes in OMIM database(FASTA output,
Multiple alignment)
H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_061762 794 606332 99.9 100.0 NP_001290074 658 606332 99.8 82.9 NP_056484 795 606331 78.6 98.6 NP_061760 796 606329 78.0 99.0 NP_061761 795 606330 77.7 98.7 Inquiries or Suggestions ?
Send a message to flexiclone AT kazusagt.comCloned ORF Nucleotide sequence for pF1KE0379 Download>KIEE0379 2382 bp ATGATGCAAACTAAAGTACAGAACAAGAAAAGGCAAGTGGCTTTCTTCATTTTATTGATG CTTTGGGGAGAGGTGGGTTCTGAATCGATTCAGTATTCCGTATTGGAGGAGACAGAAAGT GGCACGTTTGTGGCCAACTTGACAAAGGACCTGGGACTGAGGGTGGGGGAGCTGGCTTCG CGGGGCGCTCGGGTTGTTTTCAAAGGGAACAGACAACATTTGCAGTTTGATCCACAGACC CATGATTTACTGCTAAATGAAAAACTGGACCGGGAGGAGCTGTGTGGCTCCACTGAGCCG TGTGTGCTACCTTTCCAAGTGTTACTGGAAAACCCCTTGCAGTTTTTTCAGGCTTCCTTG CGAGTCAGAGATATAAATGACCACGCCCCGGAATTCCCTGCCAGAGAAATGCTCCTGAAA ATATCAGAAATTACTATGCCAGGAAAGATATTTCCTTTGAAAATGGCACACGATTTAGAC ACCGGCAGCAACGGCCTTCAGAGGTACACAATCAGCTCCAACCCTCACTTCCACGTTCTC ACCCGCAATCGCAGCGAAGGCAGGAAGTTCCCGGAGCTGGTGCTAGACAAACCGTTGGAC CGCGAGGAGCAGCCCCAACTCAGGCTAACGCTGATCGCGCTGGATGGCGGGTCTCCGCCC CGGTCAGGGACCTCCGAGATTCAGATCCAGGTTTTGGACATCAATGACAACGTCCCCGAG TTTGCTCAGGAGCTCTATGAAGCACAAGTCCCTGAGAACAACCCCCTCGGCTCTCTGGTT ATTACCGTCTCAGCCAGAGATTTAGATGCAGGATCGTTTGGGAAGGTATCTTACGCCCTG TTTCAAGTCGATGACGTCAACCAACCCTTCGAAATAAACGCAATCACAGGAGAAATTCGG CTGAGAAAGGCTTTGGATTTTGAGGAAATTCAGTCTTATGACGTGGATGTTGAGGCTACA GATGGTGGAGGCCTATCAGGAAAATGCTCTTTAGTCGTCAGGGTCCTGGACGTGAATGAC AATGCCCCTGAACTCACCATGTCGTTCTTCATCAGCCTCATCCCAGAAAACTTACCAGAG ATCACAGTGGCAGTTTTCAGTGTTTCAGATGCAGACTCTGGACATAACCAACAGGTTATT TGTTCAATAGAGAACAATCTCCCCTTTCTACTAAGACCTTCCGTGGAGAATTTCTACACC CTGGTAACAGAAGGCGCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACTATCACG GTCACTGATTTGGGGACACCAAGGCTGAAAACCCAGCAGAGCATAACTGTGCAGGTCTCC GACGTCAATGACAACGTCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAG AACAACAGCCCCGCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCAGGCATC AACGCCCAGGTCACCTACTCGCTGCTGCCGCCCCAGGACCCGCACCTGCCCCTCTCTTCC CTGGTCTCCATCAACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCGCTGGACTACGAG GCCCTGCAGTCTTTCGAGTTCCGCGTGGGCGCCACAGACCGCGGCTCCCCGGCGTTGAGC AGCGAGGCGCTGGTGCGCTTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTGTTG TACCCGCTGCAGAACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCG GGCTACCTGGTGACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTG TCGTACCAGCTGCTCAAGGCCACGGAGCTCGGTCTGTTCGGCGTGTGGGCGCACAATGGC GAGGTGCGCACCGCCAGGCTGCTGAGCGAGCGAGACGCAGCCAAGCACAGGCTGGTGGTG CTTGTCAAGGACAATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTGCTCCTG GTGGACGGCTTCTCCCAGCCCTACCTGCCTCTCCCTGAGGCGGCCCCGGCCCAAGCCCAG GCCGACTCTCTCACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTCTTCCTC TTTTCGGTGCTCCTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTG GGTCGCTACTCGGTGCCCGAGGGTCCCTTTCCAGGGCATCTGGTGGATGTGAGCGGCACC GGGACCCTATCCCAGAGCTACCAGTACAAGGTGTGTCTGACGGGAGGCTCAGAAACAAAT GAGTTCAAGTTCCTGAAGCCGATTATGCCCAACTTCCCTCCTCAGGGCACTGAGAGAGAA ATGGAAGAAACCCCCACCTCTCGGAATAGCTTCCCGTTCAGT
Cloned ORF protein sequence for pF1KE0379 Download>KIEE0379 794 aa MMQTKVQNKKRQVAFFILLMLWGEVGSESIQYSVLEETESGTFVANLTKDLGLRVGELAS RGARVVFKGNRQHLQFDPQTHDLLLNEKLDREELCGSTEPCVLPFQVLLENPLQFFQASL RVRDINDHAPEFPAREMLLKISEITMPGKIFPLKMAHDLDTGSNGLQRYTISSNPHFHVL TRNRSEGRKFPELVLDKPLDREEQPQLRLTLIALDGGSPPRSGTSEIQIQVLDINDNVPE FAQELYEAQVPENNPLGSLVITVSARDLDAGSFGKVSYALFQVDDVNQPFEINAITGEIR LRKALDFEEIQSYDVDVEATDGGGLSGKCSLVVRVLDVNDNAPELTMSFFISLIPENLPE ITVAVFSVSDADSGHNQQVICSIENNLPFLLRPSVENFYTLVTEGALDRESRAEYNITIT VTDLGTPRLKTQQSITVQVSDVNDNVPAFTQTSYTLFVRENNSPALHIGSVSATDRDSGI NAQVTYSLLPPQDPHLPLSSLVSINADNGHLFALRSLDYEALQSFEFRVGATDRGSPALS SEALVRLLVLDANDNSPFVLYPLQNGSAPCTELVPRAAEPGYLVTKVVAVDGDSGQNAWL SYQLLKATELGLFGVWAHNGEVRTARLLSERDAAKHRLVVLVKDNGEPPRSATATLHVLL VDGFSQPYLPLPEAAPAQAQADSLTVYLVVALASVSSLFLFSVLLFVAVRLCRRSRAASV GRYSVPEGPFPGHLVDVSGTGTLSQSYQYKVCLTGGSETNEFKFLKPIMPNFPPQGTERE MEETPTSRNSFPFS
Nucleotide Sequence (with vector) for pF1KE0379 Download>pF1KE0379 5495 bp GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCCATGATGCAAACT AAAGTACAGAACAAGAAAAGGCAAGTGGCTTTCTTCATTTTATTGATGCTTTGGGGAGAG GTGGGTTCTGAATCGATTCAGTATTCCGTATTGGAGGAGACAGAAAGTGGCACGTTTGTG GCCAACTTGACAAAGGACCTGGGACTGAGGGTGGGGGAGCTGGCTTCGCGGGGCGCTCGG GTTGTTTTCAAAGGGAACAGACAACATTTGCAGTTTGATCCACAGACCCATGATTTACTG CTAAATGAAAAACTGGACCGGGAGGAGCTGTGTGGCTCCACTGAGCCGTGTGTGCTACCT TTCCAAGTGTTACTGGAAAACCCCTTGCAGTTTTTTCAGGCTTCCTTGCGAGTCAGAGAT ATAAATGACCACGCCCCGGAATTCCCTGCCAGAGAAATGCTCCTGAAAATATCAGAAATT ACTATGCCAGGAAAGATATTTCCTTTGAAAATGGCACACGATTTAGACACCGGCAGCAAC GGCCTTCAGAGGTACACAATCAGCTCCAACCCTCACTTCCACGTTCTCACCCGCAATCGC AGCGAAGGCAGGAAGTTCCCGGAGCTGGTGCTAGACAAACCGTTGGACCGCGAGGAGCAG CCCCAACTCAGGCTAACGCTGATCGCGCTGGATGGCGGGTCTCCGCCCCGGTCAGGGACC TCCGAGATTCAGATCCAGGTTTTGGACATCAATGACAACGTCCCCGAGTTTGCTCAGGAG CTCTATGAAGCACAAGTCCCTGAGAACAACCCCCTCGGCTCTCTGGTTATTACCGTCTCA GCCAGAGATTTAGATGCAGGATCGTTTGGGAAGGTATCTTACGCCCTGTTTCAAGTCGAT GACGTCAACCAACCCTTCGAAATAAACGCAATCACAGGAGAAATTCGGCTGAGAAAGGCT TTGGATTTTGAGGAAATTCAGTCTTATGACGTGGATGTTGAGGCTACAGATGGTGGAGGC CTATCAGGAAAATGCTCTTTAGTCGTCAGGGTCCTGGACGTGAATGACAATGCCCCTGAA CTCACCATGTCGTTCTTCATCAGCCTCATCCCAGAAAACTTACCAGAGATCACAGTGGCA GTTTTCAGTGTTTCAGATGCAGACTCTGGACATAACCAACAGGTTATTTGTTCAATAGAG AACAATCTCCCCTTTCTACTAAGACCTTCCGTGGAGAATTTCTACACCCTGGTAACAGAA GGCGCGCTGGACAGAGAGAGCAGAGCCGAGTACAACATCACTATCACGGTCACTGATTTG GGGACACCAAGGCTGAAAACCCAGCAGAGCATAACTGTGCAGGTCTCCGACGTCAATGAC AACGTCCCCGCCTTCACCCAAACCTCCTACACCCTGTTCGTCCGCGAGAACAACAGCCCC GCCCTGCACATCGGCAGCGTCAGCGCCACAGACAGAGACTCAGGCATCAACGCCCAGGTC ACCTACTCGCTGCTGCCGCCCCAGGACCCGCACCTGCCCCTCTCTTCCCTGGTCTCCATC AACGCGGACAACGGCCACCTGTTTGCCCTCAGGTCGCTGGACTACGAGGCCCTGCAGTCT TTCGAGTTCCGCGTGGGCGCCACAGACCGCGGCTCCCCGGCGTTGAGCAGCGAGGCGCTG GTGCGCTTGCTGGTGCTGGACGCCAACGACAACTCGCCCTTCGTGTTGTACCCGCTGCAG AACGGCTCCGCGCCCTGCACCGAGCTGGTGCCCCGGGCGGCCGAGCCGGGCTACCTGGTG ACCAAGGTGGTGGCGGTGGACGGCGACTCGGGCCAGAACGCCTGGCTGTCGTACCAGCTG CTCAAGGCCACGGAGCTCGGTCTGTTCGGCGTGTGGGCGCACAATGGCGAGGTGCGCACC GCCAGGCTGCTGAGCGAGCGAGACGCAGCCAAGCACAGGCTGGTGGTGCTTGTCAAGGAC AATGGCGAGCCTCCGCGCTCGGCCACCGCCACGCTGCACGTGCTCCTGGTGGACGGCTTC TCCCAGCCCTACCTGCCTCTCCCTGAGGCGGCCCCGGCCCAAGCCCAGGCCGACTCTCTC ACCGTCTACCTGGTGGTGGCGTTGGCCTCGGTGTCGTCGCTCTTCCTCTTTTCGGTGCTC CTGTTCGTGGCGGTGCGGCTGTGCAGGAGGAGCAGGGCGGCCTCGGTGGGTCGCTACTCG GTGCCCGAGGGTCCCTTTCCAGGGCATCTGGTGGATGTGAGCGGCACCGGGACCCTATCC CAGAGCTACCAGTACAAGGTGTGTCTGACGGGAGGCTCAGAAACAAATGAGTTCAAGTTC CTGAAGCCGATTATGCCCAACTTCCCTCCTCAGGGCACTGAGAGAGAAATGGAAGAAACC CCCACCTCTCGGAATAGCTTCCCGTTCAGTGTTTAAACGAATTCGAGCTCGGTACCCGGG GATCCTCTAGAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAA GGAAGCTGAGTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTC TAAACGGGTCTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGT CCATAAAACCGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCT CTTTGCGCTTGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCA GCACCGTTTCTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCC TGAGTGCTTGCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAG GTTGGGAAGCCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGC AGGGGATCAAGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGAT GGATTGCACGCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCA CAACAGACAATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCG GTTCTTTTTGTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCG CGGCTATCGTGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACT GAAGCGGGAAGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCT CACCTTGCTCCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACG CTTGATCCGGCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGC ACTCGGATGGAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTC GCGCCAGCCGAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTC GTGACTCATGGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGA TTCATCGACTGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACC CGTGATATTGCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGT ATCGCCGCTCCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGA GCGGGACTCTGGGGTTCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTC AAAGGCGGTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGC AAAAGGCCAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAG GCTCCGCCCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCC GACAGGACTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGT TCCGACCCTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCT TTCTCATAGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGG CTGTGTGCACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCT TGAGTCCAACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGAT TAGCAGAGCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGG CTACACTAGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAA AAGAGTTGGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGT TTGCAAGCAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTC TACGGGGTCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATT ATCAAAAAGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGG ATGGCCCTTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGG GGTAATGTGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGC GCGATTGCGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATC GCGCTGAACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGT CTGCCCTCGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGA GGATCGAGATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAA ACAGAATTTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGA AGTGAAACGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTG CCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTT GTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTG CGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAA TTAAGCAGAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTA TTTTTCTAAATACATTCAAATATGTATCCGCTCAT
more Linker info
