COL8A2 ORF clone FXC01040

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Flexi ORF Clone FXC01040

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Clone info.

Species

human

Clone Name

pF1KSDF0201 Sequence (with vector) Restriction Map

Product ID

FXC01040

HaloTag Clone PID

FHC01040

ORF Sequence

DNA sequence (2109 bp)
Protein sequence (703 aa)

Linker Type

Flexi_RBS type

more Linker info

Vector Type

pF1KM Vector sequence

Restriction Map

Cloning Site

SgfI-PmeI

GenBank Accession

ORF sequence is derived from [AB384422]

Gene

FLJ00201

Symbol

COL8A2

Alias : FECD, FECD1, PPCD, PPCD2

Description

collagen, type VIII, alpha 2, transcript variant 1

Original Clone ID

sj04110

Features of the cloned ORF sequence

Description

Length: 2109 bp
Restriction map A Restriction map B
Genomic Structure

Features of the protein sequence

Description

Length: 703 aa
Result of homology search against CCDS protein database ( FASTA output, Multiple alignment) Entry Exp ID% symbol CCDS403.1 7.2e-106 100.0 COL8A2 CCDS72756.1 1.3e-96 100.0 COL8A2 CCDS2934.1 3.7e-51 57.2 COL8A1 CCDS5105.1 3.4e-48 55.5 COL10A1 CCDS14543.1 8e-29 48.7 COL4A5 The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI) [ zoom out (x2) ]
Result of InterProScan Search method interpro_ID From To Entry Definition FPrintScan IPR001073 585 611 PR00007 Complement C1q protein IPR001073 612 631 PR00007 Complement C1q protein IPR001073 657 678 PR00007 Complement C1q protein IPR001073 691 701 PR00007 Complement C1q protein HMMPfam IPR008160 123 168 PF01391 Collagen triple helix repeat IPR008160 433 491 PF01391 Collagen triple helix repeat IPR008160 495 543 PF01391 Collagen triple helix repeat IPR001073 576 700 PF00386 Complement C1q protein HMMSmart IPR001073 568 703 SM00110 Complement C1q protein ProfileScan IPR001073 570 703 PS50871 Complement C1q protein
Prediction of transmembrane (TM) segments Method No. N terminal transmembrane region C terminal type length SOSUI2 1 3 GTLTPLSSLLLLLLVLVLGCGP 24 PRIMARY 22
Result of homology search against disease genes in OMIM database(FASTA output, Multiple alignment) H_id H_len (aa) OMIM_No. ID (%) Q_ali/Q_len (%) NP_005193 703 120252,136800,609140 100.0 100.0 XP_005270534 780 120252,136800,609140 100.0 100.0 NP_001281276 638 120252,136800,609140 100.0 90.8 NP_065084 744 120251 57.2 94.0 NP_001841 744 120251 57.2 94.0 Inquiries or Suggestions ? Send a message to flexiclone AT kazusagt.com

ORF DNA

Cloned ORF Nucleotide sequence for pF1KSDF0201 Download

>FLJ00201  2109 bp
ATGCTGGGGACTCTGACACCCCTGTCTTCGCTGCTGCTGCTGCTACTGGTGCTGGTGCTG
GGGTGTGGGCCGCGGGCGTCCTCTGGTGGCGGGGCCGGTGGGGCGGCGGGCTATGCCCCA
GTGAAGTACATCCAGCCCATGCAGAAAGGACCTGTGGGACCGCCCTTCCGTGAGGGCAAA
GGCCAGTACCTGGAAATGCCTCTACCGCTGCTGCCGATGGACCTGAAGGGAGAGCCCGGC
CCCCCTGGGAAGCCCGGGCCTCGGGGTCCCCCTGGCCCCCCTGGCTTCCCAGGAAAACCA
GGCATGGGAAAGCCAGGACTCCATGGGCAGCCTGGCCCTGCTGGGCCCCCTGGCTTCTCC
CGGATGGGCAAGGCTGGTCCCCCAGGGCTCCCTGGCAAGGTCGGGCCACCAGGGCAGCCG
GGGCTTCGGGGGGAGCCAGGAATACGAGGGGACCAGGGCCTCCGGGGACCCCCAGGACCC
CCTGGCCTCCCGGGCCCCTCAGGCATTACTATCCCTGGAAAACCAGGTGCCCAAGGGGTG
CCAGGGCCCCCAGGATTCCAGGGGGAACCAGGGCCCCAGGGGGAGCCTGGGCCCCCAGGT
GATCGAGGCCTCAAGGGGGATAATGGAGTGGGCCAGCCCGGGCTGCCTGGGGCCCCAGGG
CAGGGGGGTGCCCCCGGCCCCCCCGGCCTCCCTGGTCCAGCTGGCTTAGGCAAACCTGGT
TTGGATGGGCTTCCTGGGGCCCCAGGAGACAAGGGTGAGTCTGGGCCTCCTGGAGTTCCA
GGCCCCAGGGGGGAGCCAGGAGCTGTGGGCCCAAAAGGACCTCCTGGAGTAGACGGTGTG
GGAGTCCCAGGGGCAGCAGGGTTGCCAGGACCACAGGGCCCATCAGGGGCCAAAGGGGAG
CCAGGGACCCGGGGCCCCCCTGGGCTGATAGGCCCCACTGGCTATGGGATGCCAGGACTG
CCAGGCCCCAAGGGGGACAGGGGCCCAGCTGGGGTCCCAGGACTCTTGGGGGACAGGGGT
GAGCCAGGGGAGGATGGGGAGCCAGGGGAGCAGGGCCCACAGGGTCTTGGGGGTCCCCCT
GGACTTCCTGGGTCTGCAGGGCTTCCTGGCAGACGTGGGCCCCCTGGGCCTAAGGGTGAG
GCAGGGCCTGGAGGACCCCCAGGAGTGCCTGGCATTCGAGGTGACCAGGGGCCTAGTGGC
CTGGCTGGGAAACCAGGGGTCCCAGGTGAGAGGGGACTTCCTGGGGCCCATGGACCCCCT
GGACCAACTGGGCCCAAGGGTGAGCCGGGTTTCACGGGTCGCCCTGGAGGACCAGGGGTG
GCAGGAGCCCTGGGGCAGAAAGGTGACTTGGGGCTCCCTGGGCAGCCTGGCCTGAGGGGT
CCCTCAGGAATCCCAGGACTCCAGGGTCCAGCTGGCCCTATTGGGCCCCAAGGCCTGCCG
GGCCTGAAGGGGGAACCAGGCCTGCCAGGGCCCCCTGGAGAGGGGAGAGCAGGGGAACCT
GGCACGGCTGGGCCCACGGGGCCCCCAGGGGTCCCTGGCTCCCCTGGAATCACGGGCCCT
CCGGGGCCTCCCGGGCCCCCGGGACCCCCTGGTGCCCCTGGGGCCTTCGATGAGACTGGC
ATCGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGGGTGCCGTGCTGGGCAAGGGGGGC
AAGCCACAGTTTGGGCTGGGCGAGCTGTCTGCCCATGCCACACCGGCCTTCACTGCGGTG
CTCACCTCGCCCTTCCCCGCCTCGGGCATGCCCGTGAAATTTGACCGGACTCTCTACAAT
GGCCACAGCGGCTACAACCCAGCCACTGGCATCTTCACCTGCCCTGTGGGCGGCGTCTAC
TACTTTGCTTACCATGTGCACGTCAAGGGCACCAACGTGTGGGTGGCCCTGTACAAGAAC
AACGTGCCGGCCACCTATACCTACGATGAGTACAAGAAGGGCTACCTGGACCAGGCATCT
GGTGGGGCCGTGCTCCAGCTGCGGCCCAACGACCAGGTCTGGGTGCAGATGCCGTCGGAC
CAGGCCAACGGCCTCTACTCCACGGAGTACATCCACTCCTCCTTTTCAGGATTCTTGCTC
TGCCCCACA

ORF Protein

Cloned ORF protein sequence for pF1KSDF0201 Download

>FLJ00201  703 aa
MLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGK
GQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFS
RMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGV
PGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPG
LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE
PGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPP
GLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP
GPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP
GLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETG
IAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYN
GHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQAS
GGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT

ORF+Vector

Nucleotide Sequence (with vector) for pF1KSDF0201 Download

>pF1KSDF0201  5248 bp
GGATCTCGATCCCGCGAAATTAATACGACTCACTATAGGGGAATTGTGAGCGGATAACAA
TTCCCCACTAGTAATAATTTTCTTTAACTTTAGTAAGGAGCGATCGCTTTCGAAGGAGAT
AGAACCATGCTGGGGACTCTGACACCCCTGTCTTCGCTGCTGCTGCTGCTACTGGTGCTG
GTGCTGGGGTGTGGGCCGCGGGCGTCCTCTGGTGGCGGGGCCGGTGGGGCGGCGGGCTAT
GCCCCAGTGAAGTACATCCAGCCCATGCAGAAAGGACCTGTGGGACCGCCCTTCCGTGAG
GGCAAAGGCCAGTACCTGGAAATGCCTCTACCGCTGCTGCCGATGGACCTGAAGGGAGAG
CCCGGCCCCCCTGGGAAGCCCGGGCCTCGGGGTCCCCCTGGCCCCCCTGGCTTCCCAGGA
AAACCAGGCATGGGAAAGCCAGGACTCCATGGGCAGCCTGGCCCTGCTGGGCCCCCTGGC
TTCTCCCGGATGGGCAAGGCTGGTCCCCCAGGGCTCCCTGGCAAGGTCGGGCCACCAGGG
CAGCCGGGGCTTCGGGGGGAGCCAGGAATACGAGGGGACCAGGGCCTCCGGGGACCCCCA
GGACCCCCTGGCCTCCCGGGCCCCTCAGGCATTACTATCCCTGGAAAACCAGGTGCCCAA
GGGGTGCCAGGGCCCCCAGGATTCCAGGGGGAACCAGGGCCCCAGGGGGAGCCTGGGCCC
CCAGGTGATCGAGGCCTCAAGGGGGATAATGGAGTGGGCCAGCCCGGGCTGCCTGGGGCC
CCAGGGCAGGGGGGTGCCCCCGGCCCCCCCGGCCTCCCTGGTCCAGCTGGCTTAGGCAAA
CCTGGTTTGGATGGGCTTCCTGGGGCCCCAGGAGACAAGGGTGAGTCTGGGCCTCCTGGA
GTTCCAGGCCCCAGGGGGGAGCCAGGAGCTGTGGGCCCAAAAGGACCTCCTGGAGTAGAC
GGTGTGGGAGTCCCAGGGGCAGCAGGGTTGCCAGGACCACAGGGCCCATCAGGGGCCAAA
GGGGAGCCAGGGACCCGGGGCCCCCCTGGGCTGATAGGCCCCACTGGCTATGGGATGCCA
GGACTGCCAGGCCCCAAGGGGGACAGGGGCCCAGCTGGGGTCCCAGGACTCTTGGGGGAC
AGGGGTGAGCCAGGGGAGGATGGGGAGCCAGGGGAGCAGGGCCCACAGGGTCTTGGGGGT
CCCCCTGGACTTCCTGGGTCTGCAGGGCTTCCTGGCAGACGTGGGCCCCCTGGGCCTAAG
GGTGAGGCAGGGCCTGGAGGACCCCCAGGAGTGCCTGGCATTCGAGGTGACCAGGGGCCT
AGTGGCCTGGCTGGGAAACCAGGGGTCCCAGGTGAGAGGGGACTTCCTGGGGCCCATGGA
CCCCCTGGACCAACTGGGCCCAAGGGTGAGCCGGGTTTCACGGGTCGCCCTGGAGGACCA
GGGGTGGCAGGAGCCCTGGGGCAGAAAGGTGACTTGGGGCTCCCTGGGCAGCCTGGCCTG
AGGGGTCCCTCAGGAATCCCAGGACTCCAGGGTCCAGCTGGCCCTATTGGGCCCCAAGGC
CTGCCGGGCCTGAAGGGGGAACCAGGCCTGCCAGGGCCCCCTGGAGAGGGGAGAGCAGGG
GAACCTGGCACGGCTGGGCCCACGGGGCCCCCAGGGGTCCCTGGCTCCCCTGGAATCACG
GGCCCTCCGGGGCCTCCCGGGCCCCCGGGACCCCCTGGTGCCCCTGGGGCCTTCGATGAG
ACTGGCATCGCAGGCTTGCACCTGCCCAACGGCGGTGTGGAGGGTGCCGTGCTGGGCAAG
GGGGGCAAGCCACAGTTTGGGCTGGGCGAGCTGTCTGCCCATGCCACACCGGCCTTCACT
GCGGTGCTCACCTCGCCCTTCCCCGCCTCGGGCATGCCCGTGAAATTTGACCGGACTCTC
TACAATGGCCACAGCGGCTACAACCCAGCCACTGGCATCTTCACCTGCCCTGTGGGCGGC
GTCTACTACTTTGCTTACCATGTGCACGTCAAGGGCACCAACGTGTGGGTGGCCCTGTAC
AAGAACAACGTGCCGGCCACCTATACCTACGATGAGTACAAGAAGGGCTACCTGGACCAG
GCATCTGGTGGGGCCGTGCTCCAGCTGCGGCCCAACGACCAGGTCTGGGTGCAGATGCCG
TCGGACCAGGCCAACGGCCTCTACTCCACGGAGTACATCCACTCCTCCTTTTCAGGATTC
TTGCTCTGCCCCACATACGTAGTTTAAACGAATTCGAGCTCGGTACCCGGGGATCCTCTA
GAGTCGACCTGCAGGCATGCAAGCTGATCCGGCTGCTAACAAAGCCCGAAAGGAAGCTGA
GTTGGCTGCTGCCACCGCTGAGCAATAACTAGCATAACCCCTTGGGGCCTCTAAACGGGT
CTTGAGGGGTTTTTTGCTGAAAGGAGGAACTATATCCGGTTCGCTTGCTGTCCATAAAAC
CGCCCAGTCTAGCTATCGCCATGTAAGCCCACTGCAAGCTACCTGCTTTCTCTTTGCGCT
TGCGTTTTCCCTTGTCCAGATAGCCCAGTAGCTGACATTCATCCGGGGTCAGCACCGTTT
CTGCGGACTGGCTTTCTACGTGTTCCGCTTCCTTTAGCAGCCCTTGCGCCCTGAGTGCTT
GCGGCAGCGTGAGCTTCAAAAGAATTGCCAGCTGGGGCGCCCTCTGGTAAGGTTGGGAAG
CCCTGCAAAGTAAACTGGATGGCTTTCTTGCCGCCAAGGATCTGATGGCGCAGGGGATCA
AGATCTGATCAAGAGACAGGATGACGGTCGTTTCGCATGCTTGAACAAGATGGATTGCAC
GCAGGTTCTCCGGCCGCTTGGGTGGAGAGGCTATTCGGCTATGACTGGGCACAACAGACA
ATCGGCTGCTCTGATGCCGCCGTGTTCCGGCTGTCAGCGCAGGGGCGCCCGGTTCTTTTT
GTCAAGACCGACCTGTCCGGTGCCCTGAATGAACTGCAGGACGAGGCAGCGCGGCTATCG
TGGCTGGCCACGACGGGCGTTCCTTGCGCAGCTGTGCTCGACGTTGTCACTGAAGCGGGA
AGGGACTGGCTGCTATTGGGCGAAGTGCCGGGGCAGGATCTCCTGTCATCTCACCTTGCT
CCTGCCGAGAAAGTATCCATCATGGCTGATGCAATGCGGCGGCTGCATACGCTTGATCCG
GCTACCTGCCCATTCGACCACCAAGCGAAACATCGCATCGAGCGAGCACGCACTCGGATG
GAAGCCGGTCTTGTCGATCAGGATGATCTGGACGAAGAGCATCAGGGGCTCGCGCCAGCC
GAACTGTTCGCCAGGCTCAAGGCGCGTATGCCGGATGGTGAGGATCTCGTCGTGACTCAT
GGCGATGCCTGCTTGCCGAATATCATGGTGGAAAATGGCCGCTTTTCTGGATTCATCGAC
TGTGGCCGGCTGGGTGTGGCGGACCGCTATCAGGACATAGCGTTGGCTACCCGTGATATT
GCTGAAGAGCTTGGCGGCGAATGGGCTGACCGCTTCCTCGTGCTTTACGGTATCGCCGCT
CCCGATTCGCAGCGCATCGCCTTCTATCGCCTTCTTGACGAGTTCTTCTGAGCGGGACTC
TGGGGTTCGCGAAATGACCGACCAAGCGACGCCCAACCGGTATCAGCTCACTCAAAGGCG
GTAATACGGTTATCCACAGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGC
CAGCAAAAGGCCAGGAACCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGC
CCCCCTGACGAGCATCACAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGA
CTATAAAGATACCAGGCGTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACC
CTGCCGCTTACCGGATACCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCAT
AGCTCACGCTGTAGGTATCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTG
CACGAACCCCCCGTTCAGCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCC
AACCCGGTAAGACACGACTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGA
GCGAGGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACT
AGAAGGACAGTATTTGGTATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTT
GGTAGCTCTTGATCCGGCAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAG
CAGCAGATTACGCGCAGAAAAAAAGGATTTCAAGAAGATCCTTTGATCTTTTCTACGGGG
TCTGACGCTCAGTGGAACGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAA
AGGATCTTCACCTAGATCCTTTTATAGTCCGGAAATACAGGAACGCACGCTGGATGGCCC
TTCGCTGGGATGGTGAAACCATGAAAAATGGCAGCTTCAGTGGATTAAGTGGGGGTAATG
TGGCCTGTACCCTCTGGTTGCATAGGTATTCATACGGTTAAAATTTATCAGGCGCGATTG
CGGCAGTTTTTCGGGTGGTTTGTTGCCATTTTTACCTGTCTGCTGCCGTGATCGCGCTGA
ACGCGTTTTAGCGGTGCGTACAATTAAGGGATTATGGTAAATCCACTTACTGTCTGCCCT
CGTAGCCATCGAGATAAACCGCAGTACTCCGGCCACGATGCGTCCGGCGTAGAGGATCGA
GATCTTTTCAGCCTGATACAGATTAAATCAGAACGCAGAAGCGGTCTGATAAAACAGAAT
TTGCCTGGCGGCAGTAGCGCGGTGGTCCCACCTGACCCCATGCCGAACTCAGAAGTGAAA
CGCCGTAGCGCCGATGGTAGTGTGGGGTCTCCCCATGCGAGAGTAGGGAACTGCCAGGCA
TCAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTC
GGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCA
ACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCA
GAAGGCCATCCTGACGGATGGCCTTTTTGCGTTTCTACAAACTCTTTTGTTTATTTTTCT
AAATACATTCAAATATGTATCCGCTCAT