Result of FASTA (omim) for pF1KSDF0201
FASTA searches a protein or DNA sequence data bank 36.3.4 Apr, 2011
Please cite:
W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

Query: pF1KSDF0201, 703 aa
  1>>>pF1KSDF0201 703 - 703 aa - 703 aa
Library: /omim/omim.rfq.tfa
  60827320 residues in 85289 sequences

Statistics:  Expectation_n fit: rho(ln(x))= 15.4591+/-0.000566; mu= -24.0774+/- 0.035
 mean_var=800.7260+/-171.641, 0's: 0 Z-trim(123.3): 518  B-trim: 3375 in 2/57
 Lambda= 0.045324
 statistics sampled from 42156 (42773) to 42156 sequences
Algorithm: FASTA (3.7 Nov 2010) [optimized]
Parameters: BL50 matrix (15:-5), open/ext: -10/-2
 ktup: 2, E-join: 1 (0.743), E-opt: 0.2 (0.502), width:  16
 Scan time: 14.930

The best scores are:                                      opt bits E(85289)
NP_005193 (OMIM: 120252,136800,609140) collagen al ( 703) 5227 357.5   1e-97
XP_005270534 (OMIM: 120252,136800,609140) PREDICTE ( 780) 5227 357.5 1.1e-97
NP_001281276 (OMIM: 120252,136800,609140) collagen ( 638) 4789 328.8   4e-89
NP_065084 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 2644 188.6 7.5e-47
NP_001841 (OMIM: 120251) collagen alpha-1(VIII) ch ( 744) 2644 188.6 7.5e-47
XP_011533734 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
NP_000484 (OMIM: 120110,156500) collagen alpha-1(X ( 680) 2503 179.3 4.2e-44
XP_016865737 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
XP_011533735 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
XP_006715396 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
XP_016865738 (OMIM: 120110,156500) PREDICTED: coll ( 680) 2503 179.3 4.2e-44
XP_011522643 (OMIM: 114000,120150,130000,130060,16 (1398) 1667 125.0   2e-27
XP_005257116 (OMIM: 114000,120150,130000,130060,16 (1158) 1610 121.2 2.3e-26
XP_016884751 (OMIM: 301050,303630) PREDICTED: coll (1289) 1599 120.5 4.1e-26
XP_016884750 (OMIM: 301050,303630) PREDICTED: coll (1330) 1599 120.5 4.2e-26
XP_016884752 (OMIM: 301050,303630) PREDICTED: coll (1136) 1595 120.2 4.5e-26
NP_000486 (OMIM: 301050,303630) collagen alpha-5(I (1685) 1599 120.6 4.9e-26
XP_016884749 (OMIM: 301050,303630) PREDICTED: coll (1690) 1599 120.6 4.9e-26
NP_203699 (OMIM: 301050,303630) collagen alpha-5(I (1691) 1599 120.6 4.9e-26
XP_016884748 (OMIM: 301050,303630) PREDICTED: coll (1693) 1599 120.6 4.9e-26
XP_011529151 (OMIM: 301050,303630) PREDICTED: coll (1696) 1599 120.6 4.9e-26
XP_016869755 (OMIM: 120215,130000) PREDICTED: coll (1715) 1588 119.9 8.2e-26
NP_000084 (OMIM: 120215,130000) collagen alpha-1(V (1838) 1588 119.9 8.6e-26
NP_001265003 (OMIM: 120215,130000) collagen alpha- (1838) 1588 119.9 8.6e-26
XP_011517446 (OMIM: 608461,615155) PREDICTED: coll (1352) 1553 117.5 3.4e-25
XP_011517445 (OMIM: 608461,615155) PREDICTED: coll (1353) 1553 117.5 3.4e-25
XP_016855825 (OMIM: 120280,154780,228520,603932,60 (1515) 1545 117.0 5.3e-25
XP_011517444 (OMIM: 608461,615155) PREDICTED: coll (1401) 1538 116.6 6.9e-25
XP_016855826 (OMIM: 120280,154780,228520,603932,60 (1323) 1531 116.1 9.1e-25
NP_542197 (OMIM: 120280,154780,228520,603932,60484 (1690) 1531 116.2 1.1e-24
NP_001177638 (OMIM: 120280,154780,228520,603932,60 (1767) 1531 116.2 1.1e-24
NP_001845 (OMIM: 120280,154780,228520,603932,60484 (1806) 1531 116.2 1.1e-24
NP_542196 (OMIM: 120280,154780,228520,603932,60484 (1818) 1531 116.2 1.1e-24
XP_016855824 (OMIM: 120280,154780,228520,603932,60 (1855) 1531 116.2 1.1e-24
XP_016855823 (OMIM: 120280,154780,228520,603932,60 (1857) 1531 116.2 1.1e-24
XP_011508875 (OMIM: 120190,130000) PREDICTED: coll (1453) 1525 115.7 1.3e-24
XP_016870728 (OMIM: 608461,615155) PREDICTED: coll (1214) 1522 115.4 1.3e-24
NP_000384 (OMIM: 120190,130000) collagen alpha-2(V (1499) 1525 115.7 1.3e-24
XP_016874320 (OMIM: 108300,120140,132450,150600,15 (1305) 1519 115.3 1.5e-24
NP_149162 (OMIM: 108300,120140,132450,150600,15121 (1418) 1519 115.3 1.6e-24
XP_016874319 (OMIM: 108300,120140,132450,150600,15 (1465) 1519 115.3 1.7e-24
NP_001835 (OMIM: 108300,120140,132450,150600,15121 (1487) 1519 115.3 1.7e-24
XP_016874318 (OMIM: 108300,120140,132450,150600,15 (1534) 1519 115.4 1.7e-24
XP_016874317 (OMIM: 108300,120140,132450,150600,15 (1535) 1519 115.4 1.7e-24
NP_690848 (OMIM: 610026) collagen alpha-1(XXII) ch (1626) 1503 114.3 3.7e-24
XP_016882338 (OMIM: 120216) PREDICTED: collagen al ( 966) 1476 112.3 8.8e-24
XP_011526344 (OMIM: 120216) PREDICTED: collagen al (1744) 1476 112.6 1.3e-23
NP_056534 (OMIM: 120216) collagen alpha-3(V) chain (1745) 1476 112.6 1.3e-23
XP_011519350 (OMIM: 120130,175780,180000,607595,61 (1605) 1472 112.3 1.5e-23
XP_011515191 (OMIM: 610026) PREDICTED: collagen al (1058) 1465 111.7 1.5e-23


>>NP_005193 (OMIM: 120252,136800,609140) collagen alpha-  (703 aa)
 initn: 5227 init1: 5227 opt: 5227  Z-score: 1875.3  bits: 357.5 E(85289): 1e-97
Smith-Waterman score: 5227; 100.0% identity (100.0% similar) in 703 aa overlap (1-703:1-703)

               10        20        30        40        50        60
pF1KSD MLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGK
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 MLGTLTPLSSLLLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGPVGPPFREGK
               10        20        30        40        50        60

               70        80        90       100       110       120
pF1KSD GQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFS
               70        80        90       100       110       120

              130       140       150       160       170       180
pF1KSD RMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 RMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGV
              130       140       150       160       170       180

              190       200       210       220       230       240
pF1KSD PGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPG
              190       200       210       220       230       240

              250       260       270       280       290       300
pF1KSD LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 LDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE
              250       260       270       280       290       300

              310       320       330       340       350       360
pF1KSD PGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 PGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPP
              310       320       330       340       350       360

              370       380       390       400       410       420
pF1KSD GLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPP
              370       380       390       400       410       420

              430       440       450       460       470       480
pF1KSD GPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLP
              430       440       450       460       470       480

              490       500       510       520       530       540
pF1KSD GLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPGPPGPPGPPGAPGAFDETG
              490       500       510       520       530       540

              550       560       570       580       590       600
pF1KSD IAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYN
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 IAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYN
              550       560       570       580       590       600

              610       620       630       640       650       660
pF1KSD GHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQAS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_005 GHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQAS
              610       620       630       640       650       660

              670       680       690       700   
pF1KSD GGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
       :::::::::::::::::::::::::::::::::::::::::::
NP_005 GGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
              670       680       690       700   

>>XP_005270534 (OMIM: 120252,136800,609140) PREDICTED: c  (780 aa)
 initn: 5227 init1: 5227 opt: 5227  Z-score: 1874.7  bits: 357.5 E(85289): 1.1e-97
Smith-Waterman score: 5227; 100.0% identity (100.0% similar) in 703 aa overlap (1-703:78-780)

                                             10        20        30
pF1KSD                               MLGTLTPLSSLLLLLLVLVLGCGPRASSGG
                                     ::::::::::::::::::::::::::::::
XP_005 LLSSRVRPHRPCLCWNLPRPLRPESTSTDAMLGTLTPLSSLLLLLLVLVLGCGPRASSGG
        50        60        70        80        90       100       

               40        50        60        70        80        90
pF1KSD GAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GAGGAAGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGP
       110       120       130       140       150       160       

              100       110       120       130       140       150
pF1KSD PGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRG
       170       180       190       200       210       220       

              160       170       180       190       200       210
pF1KSD DQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 DQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGV
       230       240       250       260       270       280       

              220       230       240       250       260       270
pF1KSD GQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVG
       290       300       310       320       330       340       

              280       290       300       310       320       330
pF1KSD PKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPA
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 PKGPPGVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPA
       350       360       370       380       390       400       

              340       350       360       370       380       390
pF1KSD GVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVP
       410       420       430       440       450       460       

              400       410       420       430       440       450
pF1KSD GIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDL
       470       480       490       500       510       520       

              460       470       480       490       500       510
pF1KSD GLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 GLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPG
       530       540       550       560       570       580       

              520       530       540       550       560       570
pF1KSD VPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELS
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 VPGSPGITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELS
       590       600       610       620       630       640       

              580       590       600       610       620       630
pF1KSD AHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKG
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 AHATPAFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKG
       650       660       670       680       690       700       

              640       650       660       670       680       690
pF1KSD TNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEY
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
XP_005 TNVWVALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEY
       710       720       730       740       750       760       

              700   
pF1KSD IHSSFSGFLLCPT
       :::::::::::::
XP_005 IHSSFSGFLLCPT
       770       780

>>NP_001281276 (OMIM: 120252,136800,609140) collagen alp  (638 aa)
 initn: 4789 init1: 4789 opt: 4789  Z-score: 1721.0  bits: 328.8 E(85289): 4e-89
Smith-Waterman score: 4789; 100.0% identity (100.0% similar) in 638 aa overlap (66-703:1-638)

          40        50        60        70        80        90     
pF1KSD AGYAPVKYIQPMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPG
                                     ::::::::::::::::::::::::::::::
NP_001                               MPLPLLPMDLKGEPGPPGKPGPRGPPGPPG
                                             10        20        30

         100       110       120       130       140       150     
pF1KSD FPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLR
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 FPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLR
               40        50        60        70        80        90

         160       170       180       190       200       210     
pF1KSD GPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGL
              100       110       120       130       140       150

         220       230       240       250       260       270     
pF1KSD PGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPP
              160       170       180       190       200       210

         280       290       300       310       320       330     
pF1KSD GVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGL
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GVDGVGVPGAAGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGL
              220       230       240       250       260       270

         340       350       360       370       380       390     
pF1KSD LGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGD
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 LGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGD
              280       290       300       310       320       330

         400       410       420       430       440       450     
pF1KSD QGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQ
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 QGPSGLAGKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQ
              340       350       360       370       380       390

         460       470       480       490       500       510     
pF1KSD PGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 PGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSP
              400       410       420       430       440       450

         520       530       540       550       560       570     
pF1KSD GITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATP
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 GITGPPGPPGPPGPPGAPGAFDETGIAGLHLPNGGVEGAVLGKGGKPQFGLGELSAHATP
              460       470       480       490       500       510

         580       590       600       610       620       630     
pF1KSD AFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWV
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 AFTAVLTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWV
              520       530       540       550       560       570

         640       650       660       670       680       690     
pF1KSD ALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSF
       ::::::::::::::::::::::::::::::::::::::::::::::::::::::::::::
NP_001 ALYKNNVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSF
              580       590       600       610       620       630

         700   
pF1KSD SGFLLCPT
       ::::::::
NP_001 SGFLLCPT
               

>>NP_065084 (OMIM: 120251) collagen alpha-1(VIII) chain   (744 aa)
 initn: 5240 init1: 2003 opt: 2644  Z-score: 962.1  bits: 188.6 E(85289): 7.5e-47
Smith-Waterman score: 2644; 57.2% identity (71.1% similar) in 671 aa overlap (42-702:88-743)

              20        30        40        50         60        70
pF1KSD LLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGP-VGPPFREGKGQYLEMPLPL
                                     .:.. .: .: .:      ::.  :.::  
NP_065 VPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGK--EIPLA-
        60        70        80        90       100         110     

               80        90       100       110       120       130
pF1KSD LPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGL
          .:.:: :: :.:::::::::::.::.   : ::..:.::: : ::   .:: : ::.
NP_065 ---SLRGEQGPRGEPGPRGPPGPPGLPGH---GIPGIKGKPGPQGYPG---VGKPGMPGM
             120       130       140          150          160     

              140       150       160       170       180       190
pF1KSD PGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEP
       ::: :  :.:: .:: : .:. :  : ::: : ::: :.   ::::. :.:: :: .:. 
NP_065 PGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDR
         170       180       190       200       210       220     

              200       210       220       230       240       250
pF1KSD GPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGD
       ::.: ::: : :: :::.: :.:: ::. :  :  ::::  :  :.::::. :.::  : 
NP_065 GPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGP
         230       240       250       260       270       280     

              260       270       280       290       300          
pF1KSD KGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE---PGTRGPP
        :. : :: :::.:  :. : .::::. :.: ::  :.::  :  :.:::   ::  :::
NP_065 LGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPP
         290       300       310       320       330       340     

       310       320       330       340       350       360       
pF1KSD GLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG
       ::  : : : ::.:::::::: .:::: :: ::: :  : ::  :: :  : ::.::  :
NP_065 GL--P-GIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG
            350       360       370       380       390       400  

       370       380       390       400       410       420       
pF1KSD LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKG
        ::  : ::::::.:  :: : :: .:. : .:. ::::  :: : :: .: ::: ::::
NP_065 PPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKG
            410       420       430       440       450       460  

       430       440       450       460       470       480       
pF1KSD EPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG
       : :  : :: ::: : :: ::. :.::. ::.:: ::::. ::.::::: :.:: :::::
NP_065 EAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPG
            470       480       490       500       510       520  

       490       500       510        520         530       540    
pF1KSD LPGPPGEGRAGEPGTAGPTGPPGVPGSPGITG-P--PGPPGPPGPPGAPGAFDETGIA-G
       ::::::    :.::.::  :::: ::. :  : :  ::::::::::: :...  :    :
NP_065 LPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQG
            530       540       550       560       570       580  

             550       560       570       580       590       600 
pF1KSD LHLPN-G-GVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNG
        .::. : :..:.   ..   . : .   :.  ::::: ::.:::  : ::::.. ::::
NP_065 EYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNG
            590       600       610       620       630       640  

             610       620       630       640       650       660 
pF1KSD HSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASG
       ...::: :::::: : :::::::::: :: ::::::.::: :. :::::::::.::::::
NP_065 RQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASG
            650       660       670       680       690       700  

             670       680       690       700   
pF1KSD GAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
       .::: :::.:.:..::::.:: :::. .:.::::::.:: : 
NP_065 SAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM
            710       720       730       740    

>>NP_001841 (OMIM: 120251) collagen alpha-1(VIII) chain   (744 aa)
 initn: 5240 init1: 2003 opt: 2644  Z-score: 962.1  bits: 188.6 E(85289): 7.5e-47
Smith-Waterman score: 2644; 57.2% identity (71.1% similar) in 671 aa overlap (42-702:88-743)

              20        30        40        50         60        70
pF1KSD LLLLLVLVLGCGPRASSGGGAGGAAGYAPVKYIQPMQKGP-VGPPFREGKGQYLEMPLPL
                                     .:.. .: .: .:      ::.  :.::  
NP_001 VPHMPLAKDGLAMGKEMPHLQYGKEYPHLPQYMKEIQPAPRMGKEAVPKKGK--EIPLA-
        60        70        80        90       100         110     

               80        90       100       110       120       130
pF1KSD LPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKPGLHGQPGPAGPPGFSRMGKAGPPGL
          .:.:: :: :.:::::::::::.::.   : ::..:.::: : ::   .:: : ::.
NP_001 ---SLRGEQGPRGEPGPRGPPGPPGLPGH---GIPGIKGKPGPQGYPG---VGKPGMPGM
             120       130       140          150          160     

              140       150       160       170       180       190
pF1KSD PGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPGPSGITIPGKPGAQGVPGPPGFQGEP
       ::: :  :.:: .:: : .:. :  : ::: : ::: :.   ::::. :.:: :: .:. 
NP_001 PGKPGAMGMPGAKGEIGQKGEIGPMGIPGPQGPPGPHGLPGIGKPGGPGLPGQPGPKGDR
         170       180       190       200       210       220     

              200       210       220       230       240       250
pF1KSD GPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAPGPPGLPGPAGLGKPGLDGLPGAPGD
       ::.: ::: : :: :::.: :.:: ::. :  :  ::::  :  :.::::. :.::  : 
NP_001 GPKGLPGPQGLRGPKGDKGFGMPGAPGVKGPPGMHGPPGPVGLPGVGKPGVTGFPGPQGP
         230       240       250       260       270       280     

              260       270       280       290       300          
pF1KSD KGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGAAGLPGPQGPSGAKGE---PGTRGPP
        :. : :: :::.:  :. : .::::. :.: ::  :.::  :  :.:::   ::  :::
NP_001 LGKPGAPGEPGPQGPIGVPGVQGPPGIPGIGKPGQDGIPGQPGFPGGKGEQGLPGLPGPP
         290       300       310       320       330       340     

       310       320       330       340       350       360       
pF1KSD GLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGEDGEPGEQGPQGLGGPPGLPGSAG
       ::  : : : ::.:::::::: .:::: :: ::: :  : ::  :: :  : ::.::  :
NP_001 GL--P-GIGKPGFPGPKGDRGMGGVPGALGPRGEKGPIGAPGIGGPPGEPGLPGIPGPMG
            350       360       370       380       390       400  

       370       380       390       400       410       420       
pF1KSD LPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLAGKPGVPGERGLPGAHGPPGPTGPKG
        ::  : ::::::.:  :: : :: .:. : .:. ::::  :: : :: .: ::: ::::
NP_001 PPGAIGFPGPKGEGGIVGPQGPPGPKGEPGLQGFPGKPGFLGEVGPPGMRGLPGPIGPKG
            410       420       430       440       450       460  

       430       440       450       460       470       480       
pF1KSD EPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPSGIPGLQGPAGPIGPQGLPGLKGEPG
       : :  : :: ::: : :: ::. :.::. ::.:: ::::. ::.::::: :.:: :::::
NP_001 EAGQKGVPGLPGVPGLLGPKGEPGIPGDQGLQGPPGIPGIGGPSGPIGPPGIPGPKGEPG
            470       480       490       500       510       520  

       490       500       510        520         530       540    
pF1KSD LPGPPGEGRAGEPGTAGPTGPPGVPGSPGITG-P--PGPPGPPGPPGAPGAFDETGIA-G
       ::::::    :.::.::  :::: ::. :  : :  ::::::::::: :...  :    :
NP_001 LPGPPGFPGIGKPGVAGLHGPPGKPGALGPQGQPGLPGPPGPPGPPGPPAVMPPTPPPQG
            530       540       550       560       570       580  

             550       560       570       580       590       600 
pF1KSD LHLPN-G-GVEGAVLGKGGKPQFGLGELSAHATPAFTAVLTSPFPASGMPVKFDRTLYNG
        .::. : :..:.   ..   . : .   :.  ::::: ::.:::  : ::::.. ::::
NP_001 EYLPDMGLGIDGVKPPHAYGAKKGKNGGPAYEMPAFTAELTAPFPPVGAPVKFNKLLYNG
            590       600       610       620       630       640  

             610       620       630       640       650       660 
pF1KSD HSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKNNVPATYTYDEYKKGYLDQASG
       ...::: :::::: : :::::::::: :: ::::::.::: :. :::::::::.::::::
NP_001 RQNYNPQTGIFTCEVPGVYYFAYHVHCKGGNVWVALFKNNEPVMYTYDEYKKGFLDQASG
            650       660       670       680       690       700  

             670       680       690       700   
pF1KSD GAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLLCPT
       .::: :::.:.:..::::.:: :::. .:.::::::.:: : 
NP_001 SAVLLLRPGDRVFLQMPSEQAAGLYAGQYVHSSFSGYLLYPM
            710       720       730       740    

>>XP_011533734 (OMIM: 120110,156500) PREDICTED: collagen  (680 aa)
 initn: 3592 init1: 1912 opt: 2503  Z-score: 912.8  bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)

          50        60        70        80        90       100     
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
                                     .: :::::  :::: ::: : :::::.:.:
XP_011 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
       30        40        50        60        70        80        

         110       120       130       140       150       160     
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
       ::.:.::  :::: : .:: : :::::: :  :  : .:. :  :  : ::::::::.::
XP_011 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
       90       100       110       120       130       140        

         170       180       190       200       210       220     
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
       :.::..::::: ::  : :: .: :: .: :: ::  : ::. : : :: ::  :  :  
XP_011 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
      150       160       170       180       190       200        

         230       240       250       260       270       280     
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
       :: :  :: :.:: : .:.:: :: ::. : ::  :: : ::  :: :  : .:.: :::
XP_011 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
      210       220       230       240       250       260        

         290       300       310       320       330       340     
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
       :: ::  :  :.:: ::. :  :  :: :.: ::::: ::.:::::.::  : .:: :  
XP_011 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
      270       280       290       300       310       320        

         350       360          370       380       390       400  
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
       : ::.  : :: ::::   : :  :.:: .: ::::::.::.:: : :: .:..:  :  
XP_011 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
      330          340       350       360       370       380     

            410       420       430       440       450       460  
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
       :::: ::. :: : .: ::  ::::.::  : :: :: .:  : ::  :  :. : ::  
XP_011 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
         390       400       410       420       430       440     

            470       480       490       500       510       520  
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
       :::: .:: :: :  :.:: ::.:: ::::: .  .  :  ::::::: ::  : .: ::
XP_011 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
         450       460       470       480       490       500     

            530       540       550        560        570       580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
        :::::::: ::     ..    .:.: .. :   . .: :  . .. ...  . :::..
XP_011 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
         510           520           530       540       550       

              590       600       610       620       630       640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
       :.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
XP_011 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
       560       570       580       590       600       610       

              650       660       670       680       690       700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
       ..:. :::::: :::::::::.:...:  :::::.:.:. ..:::::.::.::::::::.
XP_011 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
       620       630       640       650       660       670       

          
pF1KSD CPT
        : 
XP_011 APM
       680

>>NP_000484 (OMIM: 120110,156500) collagen alpha-1(X) ch  (680 aa)
 initn: 3592 init1: 1912 opt: 2503  Z-score: 912.8  bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)

          50        60        70        80        90       100     
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
                                     .: :::::  :::: ::: : :::::.:.:
NP_000 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
       30        40        50        60        70        80        

         110       120       130       140       150       160     
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
       ::.:.::  :::: : .:: : :::::: :  :  : .:. :  :  : ::::::::.::
NP_000 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
       90       100       110       120       130       140        

         170       180       190       200       210       220     
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
       :.::..::::: ::  : :: .: :: .: :: ::  : ::. : : :: ::  :  :  
NP_000 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
      150       160       170       180       190       200        

         230       240       250       260       270       280     
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
       :: :  :: :.:: : .:.:: :: ::. : ::  :: : ::  :: :  : .:.: :::
NP_000 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
      210       220       230       240       250       260        

         290       300       310       320       330       340     
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
       :: ::  :  :.:: ::. :  :  :: :.: ::::: ::.:::::.::  : .:: :  
NP_000 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
      270       280       290       300       310       320        

         350       360          370       380       390       400  
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
       : ::.  : :: ::::   : :  :.:: .: ::::::.::.:: : :: .:..:  :  
NP_000 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
      330          340       350       360       370       380     

            410       420       430       440       450       460  
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
       :::: ::. :: : .: ::  ::::.::  : :: :: .:  : ::  :  :. : ::  
NP_000 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
         390       400       410       420       430       440     

            470       480       490       500       510       520  
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
       :::: .:: :: :  :.:: ::.:: ::::: .  .  :  ::::::: ::  : .: ::
NP_000 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
         450       460       470       480       490       500     

            530       540       550        560        570       580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
        :::::::: ::     ..    .:.: .. :   . .: :  . .. ...  . :::..
NP_000 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
         510           520           530       540       550       

              590       600       610       620       630       640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
       :.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
NP_000 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
       560       570       580       590       600       610       

              650       660       670       680       690       700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
       ..:. :::::: :::::::::.:...:  :::::.:.:. ..:::::.::.::::::::.
NP_000 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
       620       630       640       650       660       670       

          
pF1KSD CPT
        : 
NP_000 APM
       680

>>XP_016865737 (OMIM: 120110,156500) PREDICTED: collagen  (680 aa)
 initn: 3592 init1: 1912 opt: 2503  Z-score: 912.8  bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)

          50        60        70        80        90       100     
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
                                     .: :::::  :::: ::: : :::::.:.:
XP_016 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
       30        40        50        60        70        80        

         110       120       130       140       150       160     
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
       ::.:.::  :::: : .:: : :::::: :  :  : .:. :  :  : ::::::::.::
XP_016 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
       90       100       110       120       130       140        

         170       180       190       200       210       220     
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
       :.::..::::: ::  : :: .: :: .: :: ::  : ::. : : :: ::  :  :  
XP_016 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
      150       160       170       180       190       200        

         230       240       250       260       270       280     
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
       :: :  :: :.:: : .:.:: :: ::. : ::  :: : ::  :: :  : .:.: :::
XP_016 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
      210       220       230       240       250       260        

         290       300       310       320       330       340     
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
       :: ::  :  :.:: ::. :  :  :: :.: ::::: ::.:::::.::  : .:: :  
XP_016 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
      270       280       290       300       310       320        

         350       360          370       380       390       400  
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
       : ::.  : :: ::::   : :  :.:: .: ::::::.::.:: : :: .:..:  :  
XP_016 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
      330          340       350       360       370       380     

            410       420       430       440       450       460  
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
       :::: ::. :: : .: ::  ::::.::  : :: :: .:  : ::  :  :. : ::  
XP_016 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
         390       400       410       420       430       440     

            470       480       490       500       510       520  
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
       :::: .:: :: :  :.:: ::.:: ::::: .  .  :  ::::::: ::  : .: ::
XP_016 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
         450       460       470       480       490       500     

            530       540       550        560        570       580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
        :::::::: ::     ..    .:.: .. :   . .: :  . .. ...  . :::..
XP_016 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
         510           520           530       540       550       

              590       600       610       620       630       640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
       :.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
XP_016 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
       560       570       580       590       600       610       

              650       660       670       680       690       700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
       ..:. :::::: :::::::::.:...:  :::::.:.:. ..:::::.::.::::::::.
XP_016 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
       620       630       640       650       660       670       

          
pF1KSD CPT
        : 
XP_016 APM
       680

>>XP_011533735 (OMIM: 120110,156500) PREDICTED: collagen  (680 aa)
 initn: 3592 init1: 1912 opt: 2503  Z-score: 912.8  bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)

          50        60        70        80        90       100     
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
                                     .: :::::  :::: ::: : :::::.:.:
XP_011 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
       30        40        50        60        70        80        

         110       120       130       140       150       160     
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
       ::.:.::  :::: : .:: : :::::: :  :  : .:. :  :  : ::::::::.::
XP_011 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
       90       100       110       120       130       140        

         170       180       190       200       210       220     
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
       :.::..::::: ::  : :: .: :: .: :: ::  : ::. : : :: ::  :  :  
XP_011 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
      150       160       170       180       190       200        

         230       240       250       260       270       280     
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
       :: :  :: :.:: : .:.:: :: ::. : ::  :: : ::  :: :  : .:.: :::
XP_011 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
      210       220       230       240       250       260        

         290       300       310       320       330       340     
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
       :: ::  :  :.:: ::. :  :  :: :.: ::::: ::.:::::.::  : .:: :  
XP_011 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
      270       280       290       300       310       320        

         350       360          370       380       390       400  
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
       : ::.  : :: ::::   : :  :.:: .: ::::::.::.:: : :: .:..:  :  
XP_011 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
      330          340       350       360       370       380     

            410       420       430       440       450       460  
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
       :::: ::. :: : .: ::  ::::.::  : :: :: .:  : ::  :  :. : ::  
XP_011 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
         390       400       410       420       430       440     

            470       480       490       500       510       520  
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
       :::: .:: :: :  :.:: ::.:: ::::: .  .  :  ::::::: ::  : .: ::
XP_011 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
         450       460       470       480       490       500     

            530       540       550        560        570       580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
        :::::::: ::     ..    .:.: .. :   . .: :  . .. ...  . :::..
XP_011 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
         510           520           530       540       550       

              590       600       610       620       630       640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
       :.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
XP_011 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
       560       570       580       590       600       610       

              650       660       670       680       690       700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
       ..:. :::::: :::::::::.:...:  :::::.:.:. ..:::::.::.::::::::.
XP_011 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
       620       630       640       650       660       670       

          
pF1KSD CPT
        : 
XP_011 APM
       680

>>XP_006715396 (OMIM: 120110,156500) PREDICTED: collagen  (680 aa)
 initn: 3592 init1: 1912 opt: 2503  Z-score: 912.8  bits: 179.3 E(85289): 4.2e-44
Smith-Waterman score: 2503; 55.5% identity (69.9% similar) in 632 aa overlap (76-702:59-679)

          50        60        70        80        90       100     
pF1KSD PMQKGPVGPPFREGKGQYLEMPLPLLPMDLKGEPGPPGKPGPRGPPGPPGFPGKPGMGKP
                                     .: :::::  :::: ::: : :::::.:.:
XP_006 TGIKGPLPNTKTQFFIPYTIKSKGIAVRGEQGTPGPPGPAGPRGHPGPSGPPGKPGYGSP
       30        40        50        60        70        80        

         110       120       130       140       150       160     
pF1KSD GLHGQPGPAGPPGFSRMGKAGPPGLPGKVGPPGQPGLRGEPGIRGDQGLRGPPGPPGLPG
       ::.:.::  :::: : .:: : :::::: :  :  : .:. :  :  : ::::::::.::
XP_006 GLQGEPGLPGPPGPSAVGKPGVPGLPGKPGERGPYGPKGDVGPAGLPGPRGPPGPPGIPG
       90       100       110       120       130       140        

         170       180       190       200       210       220     
pF1KSD PSGITIPGKPGAQGVPGPPGFQGEPGPQGEPGPPGDRGLKGDNGVGQPGLPGAPGQGGAP
       :.::..::::: ::  : :: .: :: .: :: ::  : ::. : : :: ::  :  :  
XP_006 PAGISVPGKPGQQGPTGAPGPRGFPGEKGAPGVPGMNGQKGEMGYGAPGRPGERGLPGPQ
      150       160       170       180       190       200        

         230       240       250       260       270       280     
pF1KSD GPPGLPGPAGLGKPGLDGLPGAPGDKGESGPPGVPGPRGEPGAVGPKGPPGVDGVGVPGA
       :: :  :: :.:: : .:.:: :: ::. : ::  :: : ::  :: :  : .:.: :::
XP_006 GPTGPSGPPGVGKRGENGVPGQPGIKGDRGFPGEMGPIGPPGPQGPPGERGPEGIGKPGA
      210       220       230       240       250       260        

         290       300       310       320       330       340     
pF1KSD AGLPGPQGPSGAKGEPGTRGPPGLIGPTGYGMPGLPGPKGDRGPAGVPGLLGDRGEPGED
       :: ::  :  :.:: ::. :  :  :: :.: ::::: ::.:::::.::  : .:: :  
XP_006 AGAPGQPGIPGTKGLPGAPGIAGPPGPPGFGKPGLPGLKGERGPAGLPGGPGAKGEQGPA
      270       280       290       300       310       320        

         350       360          370       380       390       400  
pF1KSD GEPGEQGPQGLGGPPGL--P-GSAGLPGRRGPPGPKGEAGPGGPPGVPGIRGDQGPSGLA
       : ::.  : :: ::::   : :  :.:: .: ::::::.::.:: : :: .:..:  :  
XP_006 GLPGK--P-GLTGPPGNMGPQGPKGIPGSHGLPGPKGETGPAGPAGYPGAKGERGSPGSD
      330          340       350       360       370       380     

            410       420       430       440       450       460  
pF1KSD GKPGVPGERGLPGAHGPPGPTGPKGEPGFTGRPGGPGVAGALGQKGDLGLPGQPGLRGPS
       :::: ::. :: : .: ::  ::::.::  : :: :: .:  : ::  :  :. : ::  
XP_006 GKPGYPGKPGLDGPKGNPGLPGPKGDPGVGGPPGLPGPVGPAGAKGMPGHNGEAGPRGAP
         390       400       410       420       430       440     

            470       480       490       500       510       520  
pF1KSD GIPGLQGPAGPIGPQGLPGLKGEPGLPGPPGEGRAGEPGTAGPTGPPGVPGSPGITGPPG
       :::: .:: :: :  :.:: ::.:: ::::: .  .  :  ::::::: ::  : .: ::
XP_006 GIPGTRGPIGPPGIPGFPGSKGDPGSPGPPGPAGIATKGLNGPTGPPGPPGPRGHSGEPG
         450       460       470       480       490       500     

            530       540       550        560        570       580
pF1KSD PPGPPGPPGAPGAFDETGIAGLHLPNGGVE-GAVLGKGGKPQFGLGE-LSAHATPAFTAV
        :::::::: ::     ..    .:.: .. :   . .: :  . .. ...  . :::..
XP_006 LPGPPGPPGPPGQ----AV----MPEGFIKAGQRPSLSGTPLVSANQGVTGMPVSAFTVI
         510           520           530       540       550       

              590       600       610       620       630       640
pF1KSD LTSPFPASGMPVKFDRTLYNGHSGYNPATGIFTCPVGGVYYFAYHVHVKGTNVWVALYKN
       :.. .:: : :. ::. ::: .. :.: :::::: . :.:::.::::::::.:::.::::
XP_006 LSKAYPAIGTPIPFDKILYNRQQHYDPRTGIFTCQIPGIYYFSYHVHVKGTHVWVGLYKN
       560       570       580       590       600       610       

              650       660       670       680       690       700
pF1KSD NVPATYTYDEYKKGYLDQASGGAVLQLRPNDQVWVQMPSDQANGLYSTEYIHSSFSGFLL
       ..:. :::::: :::::::::.:...:  :::::.:.:. ..:::::.::.::::::::.
XP_006 GTPVMYTYDEYTKGYLDQASGSAIIDLTENDQVWLQLPNAESNGLYSSEYVHSSFSGFLV
       620       630       640       650       660       670       

          
pF1KSD CPT
        : 
XP_006 APM
       680




703 residues in 1 query   sequences
60827320 residues in 85289 library sequences
 Tcomplib [36.3.4 Apr, 2011] (8 proc)
 start: Thu Nov  3 08:56:30 2016 done: Thu Nov  3 08:56:32 2016
 Total Scan time: 14.930 Total Display time:  0.160

Function used was FASTA [36.3.4 Apr, 2011]
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