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Gene/Protein Characteristic Table for FLJ00201

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Product ID	ORK01040
Accession No	AK074129
Clone name	sj04110
Vector information	The cDNA fragment was inserted at the SalI-NotI site of the ... The cDNA fragment was inserted at the SalI-NotI site of the pBluescript II SK(+) vector (GenBank Accession No. X52328). The 5' end of the cDNA was repaired and ligated with the SalI adapter (5'TCGACCCACGCGTCCG3') and inserted at the SalI site of the vector. The 3'end of the cDNA was inserted at the NotI site of the vector.
cDNA sequence	DNA sequence (4443 bp) Predicted protein sequence (705 aa)
HaloTag ORF Clone	FHC01040
Flexi ORF Clone	FXC01040
Source	Human spleen
Rouge ID	mFLJ00201 by Kazusa Mouse cDNA Project

Length: 4443 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

Length: 705 aa
Result of homology search against nr database (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other entries from Kazusa human cDNA project (FASTA output, Multiple alignment)

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method	interpro_ID	From	To	Entry	Definition
FPrintScan	IPR001073	587	613	PR00007	Complement C1q protein
	IPR001073	614	633	PR00007	Complement C1q protein
	IPR001073	659	680	PR00007	Complement C1q protein
	IPR001073	693	703	PR00007	Complement C1q protein
HMMPfam	IPR008160	111	169	PF01391	Collagen triple helix repeat
	IPR008160	175	233	PF01391	Collagen triple helix repeat
	IPR008160	239	297	PF01391	Collagen triple helix repeat
	IPR008160	298	356	PF01391	Collagen triple helix repeat
	IPR008160	360	419	PF01391	Collagen triple helix repeat
	IPR008160	420	479	PF01391	Collagen triple helix repeat
	IPR008160	480	538	PF01391	Collagen triple helix repeat
	IPR001073	578	702	PF00386	Complement C1q protein
HMMSmart	IPR001073	570	705	SM00110	Complement C1q protein
ProfileScan	NULL	23	569	PS50315	NULL
	IPR000694	48	535	PS50099	Proline-rich region
	IPR008160	78	536	PS50288	Collagen triple helix repeat
ScanRegExp	IPR001073	596	626	PS01113	Complement C1q protein

Prediction of transmembrane (TM) segments

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	4	LGTLTPLSSLLLLLLVLVLGCG	25	PRIMARY	22

Experimental conditions

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