BLASTX alignment cluster 33    (93864..101553)

Local alignments in this cluster

gi|4544372|gb|AAD22283.1|AC006920_7[fasta] (AC006920) putative reverse transcriptase [Arabidopsis thaliana]
Length 1787 aa
position (link: detail on the area) subject position direction score
33861..34073 (290..360) + 531
39271..39242 (1742..1751) - 40
39436..39302 (1685..1729) - 46
39652..39506 (1614..1662) - 101
39815..39648 (1560..1615) - 69
39985..39887 (1503..1535) - 92
40078..40049 (1472..1481) - 44
40304..40086 (1397..1469) - 73
40923..40789 (834..878) - 104
41115..41020 (788..819) - 58
94780..95268 (204..366) + 355
97742..97810 (464..486) + 72
98093..98191 (563..595) + 70
98413..98559 (653..701) + 102
98806..98955 (716..765) + 128
98945..99427 (895..1055) + 631
99476..99646 (1052..1108) + 190
99631..99825 (1104..1168) + 223
100006..100068 (1192..1212) + 78
100092..100220 (1259..1301) + 122
100385..100810 (1380..1521) + 335
100808..101050 (1518..1598) + 296
101056..101547 (1603..1766) + 494
115147..115251 (973..1007) + 105
115220..115378 (997..1049) + 160
115444..115647 (1052..1119) + 157

gi|3377834[fasta] (AF075598) No definition line found [Arabidopsis thaliana]
Length 681 aa
position (link: detail on the area) subject position direction score
93864..94316 (1..151) + 52
94318..94413 (151..182) + 146
94450..94728 (182..274) + 390
94717..95031 (268..372) + 484
97727..97852 (379..420) + 216
97997..98329 (441..551) + 553
98332..98718 (553..681) + 531

gi|4417309|gb|AAD20433|[fasta] (AC006446) putative pol polyprotein with a reverse transcriptase domain [Arabidopsis thaliana]
Length 889 aa
position (link: detail on the area) subject position direction score
98000..98050 (2..18) + 106
98155..98223 (24..46) + 105
98225..98329 (43..77) + 163
98332..98961 (79..288) + 875
98960..99511 (361..544) + 812
99631..100059 (555..697) + 618
100092..100238 (747..795) + 210
115220..115387 (458..513) + 134
115387..115476 (514..543) + 69
115594..115647 (553..570) + 52

gi|4557066|gb|AAD22505.1|AC007045_5[fasta] (AC007045) putative Tat1 pol polyprotein [Arabidopsis thaliana]
Length 1212 aa
position (link: detail on the area) subject position direction score
94804..94986 (79..139) + 122
95092..95205 (145..182) + 103
95212..95313 (184..217) + 71
97733..97816 (242..269) + 78
98165..98317 (281..331) + 78
98863..98982 (355..394) + 72
98945..99217 (475..565) + 304
99338..99400 (564..584) + 74
99380..99646 (579..667) + 281
99631..99864 (663..740) + 297
100053..100214 (762..815) + 110
100370..100675 (873..974) + 285
100742..100798 (984..1002) + 85
100850..101053 (1012..1079) + 234
101212..101532 (1081..1187) + 305
115330..115647 (573..678) + 226

gi|4263831|gb|AAD15474|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1466 aa
position (link: detail on the area) subject position direction score
17553..17753 (168..234) + 137
33846..34067 (192..265) + 93
39652..39503 (1113..1162) - 102
40923..40789 (516..560) - 104
43936..44049 (426..463) + 59
94780..95313 (111..288) + 369
98150..98329 (380..439) + 89
98329..98424 (440..471) + 70
98960..99586 (582..790) + 786
100092..100214 (824..864) + 126
100484..100798 (953..1057) + 331
100823..100870 (1064..1079) + 64
101056..101544 (1102..1264) + 504
114584..114631 (309..324) + 68
114641..114757 (326..364) + 72
115147..115254 (655..690) + 115
115217..115378 (678..731) + 177
115378..115554 (732..790) + 192
122391..122095 (168..266) - 82

show all (75) hits

   gi|4115365
   gi|4378066|gb|AAD19359|
   gi|4206306
   gi|3377833
   gi|3695395
   gi|4406792|gb|AAD20101|
   gi|4417307|gb|AAD20431|
   gi|4417301|gb|AAD20425|
   gi|4432797|gb|AAD20649|
   gi|4206309
   gi|4539021|emb|CAB39733.1|
   gi|1085915|pir||S52564
   gi|3695397
   gi|4432801|gb|AAD20653|
   gi|130407|sp|P10394|POL4_DROME
   gi|4432807|gb|AAD20658|
   gi|4539660|gb|AAD22153.1|AF061282_6
   gi|629693|pir||S47444
   gi|2864621|emb|CAA16968|
   gi|2133676|pir||S70430
   gi|3510505
   gi|101042|pir||A36373
   gi|478289|pir||JN0791
   gi|1710054|sp|Q05654|RDPO_SCHPO
   gi|4235644
   gi|2842524|emb|CAA16837|
   gi|130405|sp|P04323|POL3_DROME
   gi|280492|pir||S23570
   gi|2791289|emb|CAA04050|
   gi|3493214
   gi|1825615
   gi|4539436|emb|CAB40024.1|
   gi|2995405|emb|CAA73042|
   gi|4263052|gb|AAD15321|
   gi|4263542|gb|AAD15356|
   gi|3319351
   gi|3810595
   gi|4544430|gb|AAD22339.1|AC006955_25
   gi|4539665|gb|AAD22158.1|AF061282_11
   gi|1542877|emb|CAA65152|
   gi|1764013|emb|CAB06047|
   gi|1226168
   gi|522302
   gi|102939|pir||B36329
   gi|3377853
   gi|2133292|pir||S60179
   gi|4063760
   gi|2133581|pir||S68306
   gi|2522228|dbj|BAA22787|
   gi|1030731|emb|CAA32198|
   gi|1402848
   gi|4165194|emb|CAA08807|
   gi|85056|pir||S02021
   gi|4432802|gb|AAD20654|
   gi|422418|pir||S34639
   gi|4325361|gb|AAD17358|
   gi|4512237|dbj|BAA75235.1|
   gi|4512247|dbj|BAA75238.1|
   gi|4512242|dbj|BAA75236.1|
   gi|4557068|gb|AAD22507.1|AC007045_7
   gi|130398|sp|P20825|POL2_DROME
   gi|4512244|dbj|BAA75237.1|
   gi|226407|prf||1510387A
   gi|2832245
   gi|4432810|gb|AAD20661|
   gi|4388825|gb|AAD19780|
   gi|2435545
   gi|557718
   gi|84801|pir||S08405
   gi|4567295|gb|AAD23707.1|AC006918_5

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