information on T3E15
(94780..95268)
Direction: +
Frame: 1
ORF
94447..95358 (Met: 94558 94753 94795 94804 94816 94870 94999 95025 95051)
VAFLQAPANALVKNLATGNETSTTPAFPRLPVPTLLSMGCSPPRYTWTRNQTTASSSRIP
GSSTQQQTSIANPPSVSRIPGSDLLNSPTDPQAPVDPHNVVDMETFRNYAAQTNANMAQM
HSRMHLAVSDAPDIDRVIEDTMRTLFTNRIARFCLRDVGRLRFPEYDGTSDPKAHLRSFR
FAIT*VPDRRRK*QVIAVSS*NLVGHALEWFASLEGNSIDTFDQLATAFLKQYSVLIEHR
TSEADLWSLTQLQNESLRSYVKKFKAIKSKIANLNKEVAIAALRNGLCTTTNIHILITRE
TL
GenBank annotation
None
BLASTX cluster
93864..101553 cluster 33 75 hits for protein gene
94957..95262 cluster 32 1 hits for protein gene
BLASTN cluster
None
GENSCAN
93864..101613 gene model 26
Suboptimal exon
94447..94998 Term Phase: 0 Score: 0.285
94462..94998 Term Phase: 0 Score: 0.580
Grail
Shadow exon
94499..95001 exon Phase: 1 Score: 89
95054..95312 exon Phase: 1 Score: 68
Exon-Intron boundary candidatates
Acceptor |
94447 [0.083] (0) |
94462 [0.747] (0) |
94499 [0.019] (1) |
94578 [0.022] (2) |
94688 [0.032] (1) |
94707 [0.003] (2) |
94778 [0.003] (1) |
94829 [0.002] (1) |
94893 [0.006] (2) |
95033 [0.048] (1) |
95054 [0.004] (1) |
95066 [0.050] (1) |
95099 [0.002] (1) |
95149 [0.061] (0) |
95172 [0.313] (2) |
Donor |
94577 [0.051] (2) |
94728 [0.006] (0) |
94827 [0.005] (0) |
94940 [0.006] (2) |
95032 [0.200] (1) |
95283 [0.74N/0.004] (0) |
95308 [0.93N/0.062] (1) |
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