BLASTX alignment cluster 33    (93864..101553)

Local alignments in this cluster

gi|4544372|gb|AAD22283.1|AC006920_7[fasta] (AC006920) putative reverse transcriptase [Arabidopsis thaliana]
Length 1787 aa
position (link: detail on the area) subject position direction score
33861..34073 (290..360) + 531
39271..39242 (1742..1751) - 40
39436..39302 (1685..1729) - 46
39652..39506 (1614..1662) - 101
39815..39648 (1560..1615) - 69
39985..39887 (1503..1535) - 92
40078..40049 (1472..1481) - 44
40304..40086 (1397..1469) - 73
40923..40789 (834..878) - 104
41115..41020 (788..819) - 58
94780..95268 (204..366) + 355
97742..97810 (464..486) + 72
98093..98191 (563..595) + 70
98413..98559 (653..701) + 102
98806..98955 (716..765) + 128
98945..99427 (895..1055) + 631
99476..99646 (1052..1108) + 190
99631..99825 (1104..1168) + 223
100006..100068 (1192..1212) + 78
100092..100220 (1259..1301) + 122
100385..100810 (1380..1521) + 335
100808..101050 (1518..1598) + 296
101056..101547 (1603..1766) + 494
115147..115251 (973..1007) + 105
115220..115378 (997..1049) + 160
115444..115647 (1052..1119) + 157

gi|3377834[fasta] (AF075598) No definition line found [Arabidopsis thaliana]
Length 681 aa
position (link: detail on the area) subject position direction score
93864..94316 (1..151) + 52
94318..94413 (151..182) + 146
94450..94728 (182..274) + 390
94717..95031 (268..372) + 484
97727..97852 (379..420) + 216
97997..98329 (441..551) + 553
98332..98718 (553..681) + 531

gi|4417309|gb|AAD20433|[fasta] (AC006446) putative pol polyprotein with a reverse transcriptase domain [Arabidopsis thaliana]
Length 889 aa
position (link: detail on the area) subject position direction score
98000..98050 (2..18) + 106
98155..98223 (24..46) + 105
98225..98329 (43..77) + 163
98332..98961 (79..288) + 875
98960..99511 (361..544) + 812
99631..100059 (555..697) + 618
100092..100238 (747..795) + 210
115220..115387 (458..513) + 134
115387..115476 (514..543) + 69
115594..115647 (553..570) + 52

gi|4557066|gb|AAD22505.1|AC007045_5[fasta] (AC007045) putative Tat1 pol polyprotein [Arabidopsis thaliana]
Length 1212 aa
position (link: detail on the area) subject position direction score
94804..94986 (79..139) + 122
95092..95205 (145..182) + 103
95212..95313 (184..217) + 71
97733..97816 (242..269) + 78
98165..98317 (281..331) + 78
98863..98982 (355..394) + 72
98945..99217 (475..565) + 304
99338..99400 (564..584) + 74
99380..99646 (579..667) + 281
99631..99864 (663..740) + 297
100053..100214 (762..815) + 110
100370..100675 (873..974) + 285
100742..100798 (984..1002) + 85
100850..101053 (1012..1079) + 234
101212..101532 (1081..1187) + 305
115330..115647 (573..678) + 226

gi|4263831|gb|AAD15474|[fasta] (AC006067) putative reverse transcriptase [Arabidopsis thaliana]
Length 1466 aa
position (link: detail on the area) subject position direction score
17553..17753 (168..234) + 137
33846..34067 (192..265) + 93
39652..39503 (1113..1162) - 102
40923..40789 (516..560) - 104
43936..44049 (426..463) + 59
94780..95313 (111..288) + 369
98150..98329 (380..439) + 89
98329..98424 (440..471) + 70
98960..99586 (582..790) + 786
100092..100214 (824..864) + 126
100484..100798 (953..1057) + 331
100823..100870 (1064..1079) + 64
101056..101544 (1102..1264) + 504
114584..114631 (309..324) + 68
114641..114757 (326..364) + 72
115147..115254 (655..690) + 115
115217..115378 (678..731) + 177
115378..115554 (732..790) + 192
122391..122095 (168..266) - 82

gi|4115365[fasta] (AC005957) reverse transcriptase-like protein [Arabidopsis thaliana]
Length 1329 aa
position (link: detail on the area) subject position direction score
39652..39476 (1156..1214) - 91
39830..39663 (1097..1152) - 77
40256..40086 (968..1024) - 63
40923..40789 (484..528) - 107
94675..95235 (89..275) + 152
98449..98637 (348..410) + 203
98960..98998 (550..562) + 64
99395..99586 (627..690) + 200
99631..99825 (699..763) + 245
100092..100220 (821..863) + 106
100370..100798 (930..1072) + 423
100844..101053 (1072..1141) + 239
101056..101553 (1145..1310) + 481
115333..115554 (617..690) + 115
115585..115647 (694..714) + 75
122385..122191 (183..247) - 59

gi|4378066|gb|AAD19359|[fasta] (AF098806) polyprotein [Sorghum bicolor]
Length 1877 aa
position (link: detail on the area) subject position direction score
22527..22598 (40..63) + 114
39271..39197 (1832..1856) - 48
39418..39302 (1784..1822) - 61
39631..39476 (1719..1770) - 94
39848..39663 (1646..1707) - 99
39934..39887 (1617..1632) - 48
40078..39947 (1568..1611) - 47
40304..40074 (1493..1569) - 106
94963..95313 (184..300) + 130
98329..98484 (651..702) + 104
98515..98721 (717..785) + 105
98821..98958 (816..861) + 72
98960..99397 (995..1140) + 391
99389..99553 (1137..1191) + 111
99631..99852 (1222..1295) + 186
99886..100059 (1308..1365) + 100
100370..100804 (1471..1615) + 224
100817..101050 (1618..1695) + 151
101092..101256 (1713..1767) + 88
101467..101544 (1830..1855) + 60
115217..115366 (1091..1140) + 95
115393..115521 (1149..1191) + 82
115537..115647 (1201..1237) + 67

gi|4206306[fasta] (AF049110) prpol [Zea mays]
Length 1317 aa
position (link: detail on the area) subject position direction score
39271..39242 (1272..1281) - 39
39433..39314 (1219..1258) - 54
39622..39506 (1159..1197) - 70
39860..39672 (1079..1141) - 87
40078..39917 (1005..1058) - 85
40304..40074 (930..1006) - 106
40923..40789 (364..408) - 99
41115..41020 (318..349) - 51
98332..98481 (92..141) + 286
98518..98676 (158..210) + 113
98854..98958 (262..296) + 68
98960..99568 (430..632) + 474
99646..99852 (663..731) + 177
99871..100053 (740..800) + 81
100370..100813 (908..1055) + 228
100814..101050 (1054..1132) + 175
101089..101277 (1149..1211) + 98
115150..115251 (504..537) + 62
115241..115378 (534..579) + 85
115390..115521 (584..627) + 52
115540..115647 (638..673) + 47

gi|3377833[fasta] (AF075598) contains similarity to Nicotiana tabacum probable integrase (GB:X80830) [Arabidopsis thaliana]
Length 375 aa
position (link: detail on the area) subject position direction score
100044..100103 (19..38) + 52
100092..100247 (48..99) + 208
100322..100507 (134..195) + 299
100559..100831 (173..263) + 362
100880..101038 (263..315) + 266
101006..101212 (307..375) + 235

gi|3695395[fasta] (AF096372) contains similarity to reverse transcriptase (Pfam: PF00078 rvt, E=4.3e-08) [Arabidopsis thaliana]
Length 637 aa
position (link: detail on the area) subject position direction score
94804..95031 (1..76) + 103
98102..98179 (140..165) + 71
98237..98329 (185..215) + 88
98416..98673 (231..316) + 217
98987..99328 (453..566) + 361
99335..99556 (563..636) + 239
114845..114928 (77..104) + 87
115147..115239 (517..547) + 112
115339..115527 (575..637) + 156

gi|4406792|gb|AAD20101|[fasta] (AC006304) putative reverse transcriptase [Arabidopsis thaliana]
Length 764 aa
position (link: detail on the area) subject position direction score
40923..40789 (549..593) - 103
41115..41020 (503..534) - 58
94780..94992 (96..166) + 156
97736..97810 (183..207) + 75
98108..98176 (288..310) + 57
98183..98329 (312..360) + 61
98329..98661 (361..471) + 262
98960..99400 (615..761) + 555
115150..115251 (689..722) + 100
115238..115357 (718..757) + 105

gi|4417307|gb|AAD20431|[fasta] (AC006446) putative pol polyprotein [Arabidopsis thaliana]
Length 353 aa
position (link: detail on the area) subject position direction score
39652..39578 (323..347) - 52
39830..39648 (264..324) - 75
39976..39896 (215..241) - 62
40313..40086 (110..185) - 73
100092..100220 (19..61) + 237
100382..100657 (95..186) + 229
100676..100810 (186..230) + 174
100808..101053 (227..308) + 268
101056..101181 (312..353) + 138

gi|4417301|gb|AAD20425|[fasta] (AC006446) hypothetical protein [Arabidopsis thaliana]
Length 284 aa
position (link: detail on the area) subject position direction score
93864..94067 (1..68) + 310
94048..94143 (63..94) + 80
94393..94521 (90..132) + 140
94522..94854 (109..219) + 324
94914..95012 (227..259) + 127

gi|4432797|gb|AAD20649|[fasta] (AC006437) putative pol polyprotein [Arabidopsis thaliana]
Length 863 aa
position (link: detail on the area) subject position direction score
94768..94887 (98..137) + 71
97480..97617 (147..192) + 58
99143..99646 (324..491) + 438
99745..99930 (497..558) + 162
100012..100077 (556..577) + 60
100092..100220 (621..663) + 142
100390..100578 (676..738) + 62
115150..115218 (337..359) + 58
115289..115378 (383..412) + 105
115384..115620 (415..493) + 158

gi|4206309[fasta] (AF049112) prpol [Zea mays]
Length 479 aa
position (link: detail on the area) subject position direction score
98960..99568 (51..253) + 50
99572..99646 (259..283) + 49
99646..99846 (284..350) + 173
99865..100053 (359..421) + 82
115217..115378 (147..200) + 89
115390..115521 (205..248) + 54
115540..115647 (259..294) + 48

gi|4539021|emb|CAB39733.1|[fasta] (AJ133521) protease, reverse transcriptase, ribonuclease H, integrase [Drosophila buzzatii]
Length 1147 aa
position (link: detail on the area) subject position direction score
39860..39699 (898..951) - 112
39934..39887 (873..888) - 43
40075..40046 (825..834) - 39
40112..40086 (813..821) - 36
40298..40125 (752..809) - 44
98966..99646 (415..641) + 432
99688..99804 (657..695) + 83
100628..100798 (813..869) + 89
100823..101050 (876..951) + 116

gi|1085915|pir||S52564[fasta] hypothetical protein 2 (clone Db314) - fruit fly (Drosophila buzzatii) retrotransposon Osvaldo
Length 754 aa
position (link: detail on the area) subject position direction score
39860..39699 (594..647) - 105
39934..39887 (569..584) - 40
39967..39941 (557..565) - 35
40075..40046 (521..530) - 39
40220..40125 (474..505) - 37
99422..99646 (266..340) + 126
99688..99804 (356..394) + 71
100628..100798 (509..565) + 82
100823..101050 (572..647) + 102

gi|3695397[fasta] (AF096372) No definition line found [Arabidopsis thaliana]
Length 464 aa
position (link: detail on the area) subject position direction score
94777..95316 (184..363) + 64
98111..98194 (434..461) + 71

gi|4432801|gb|AAD20653|[fasta] (AC006437) unknown protein [Arabidopsis thaliana]
Length 411 aa
position (link: detail on the area) subject position direction score
94861..95313 (55..205) + 167
97480..97644 (206..260) + 73
98213..98326 (353..390) + 90

gi|130407|sp|P10394|POL4_DROME[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|74644|pir||GNFF42 retrovirus-related pol polyprotein - fruit fly (Drosophila melanogaster) transposon 412
gi|1335652|emb|CAA27750| (X04132) ORF 4 (RNA2) [Drosophila melanogaster]
Length 1237 aa
position (link: detail on the area) subject position direction score
98957..99634 (436..661) + 45
100589..100798 (910..979) + 72
100847..101050 (994..1061) + 77

gi|4432807|gb|AAD20658|[fasta] (AC006570) putative polyprotein [Arabidopsis thaliana]
Length 1611 aa
position (link: detail on the area) subject position direction score
39619..39509 (1357..1393) - 75
40923..40789 (710..754) - 93
70970..70899 (427..450) - 59
98966..99553 (778..973) + 266
100913..101050 (1285..1330) + 78

gi|4539660|gb|AAD22153.1|AF061282_6[fasta] (AF061282) polyprotein [Sorghum bicolor]
Length 1484 aa
position (link: detail on the area) subject position direction score
39391..39299 (1322..1352) - 42
39619..39509 (1258..1294) - 67
39848..39651 (1182..1247) - 90
98960..99553 (677..874) + 68
100892..101050 (1179..1231) + 100

gi|629693|pir||S47444[fasta] probable integrase - common tobacco (fragment)
gi|530742|emb|CAA56791| (X80830) integrase [Nicotiana tabacum]
Length 382 aa
position (link: detail on the area) subject position direction score
39646..39500 (197..245) - 84
39839..39651 (134..196) - 99
39985..39911 (83..107) - 56
40160..40080 (25..51) - 51
100571..100792 (22..95) + 95
100817..101050 (103..180) + 196
101080..101283 (192..259) + 53
101356..101463 (283..318) + 64
101473..101553 (321..347) + 62

gi|2864621|emb|CAA16968|[fasta] (AL021811) hypothetical protein [Arabidopsis thaliana]
Length 452 aa
position (link: detail on the area) subject position direction score
99655..99699 (131..145) + 215
99697..99855 (144..196) + 205
99886..100068 (206..266) + 177

gi|2133676|pir||S70430[fasta] hypothetical protein 4 - fruit fly (Drosophila melanogaster) retrotransposon mgd1
Length 1186 aa
position (link: detail on the area) subject position direction score
98957..99634 (384..609) + 83
100535..100798 (841..928) + 62
100847..101050 (943..1010) + 80

gi|3510505[fasta] (AF030881) pol polyprotein [Fugu rubripes]
Length 1187 aa
position (link: detail on the area) subject position direction score
39848..39651 (872..937) - 81
39970..39857 (830..867) - 61
98966..99571 (396..597) + 92
100892..101050 (869..921) + 76

gi|101042|pir||A36373[fasta] hypothetical protein Tf1 - fission yeast (Schizosaccharomyces pombe)
gi|173477 (M38526) Tf1 protein [Schizosaccharomyces pombe]
Length 1330 aa
position (link: detail on the area) subject position direction score
98966..99544 (528..720) + 85
100823..101050 (1002..1077) + 75

gi|478289|pir||JN0791[fasta] Tf2 protein, Retrotransposon - fission yeast (Schizosaccharomyces pombe)
gi|173439 (L10324) protease, reverse transcriptase, RNAse H, integrase protein [Schizosaccharomyces pombe]
gi|2388948|emb|CAB11682.1| (Z98978) SPAC27E2.08 retrotransposable element tf2 155 kd, le n:1333aa, identical to RDPO_SCHPO, Q05654, (1333aa) [Schizosaccharomyces pombe]
Length 1333 aa
position (link: detail on the area) subject position direction score
98966..101050 (531..1080) + 72
98966..101050 (531..1080) + 72

gi|1710054|sp|Q05654|RDPO_SCHPO[fasta] RETROTRANSPOSABLE ELEMENT TF2 155 KD PROTEIN
gi|1177360|emb|CAA93236| (Z69240) SPAC26A3.13c, len: 1333, PIR:JN0791 retrotransposon Tf2 protein, contains PS00141 Eukaryotic and viral aspartyl proteases active site [Schizosaccharomyces pombe]
Length 1333 aa
position (link: detail on the area) subject position direction score
98966..99544 (531..723) + 139
100826..101050 (1006..1080) + 72

gi|4235644[fasta] (AF119040) polyprotein [Lycopersicon esculentum]
Length 1542 aa
position (link: detail on the area) subject position direction score
39661..39503 (1272..1324) - 55
39848..39651 (1210..1275) - 95
39970..39869 (1168..1201) - 56
98957..99559 (728..928) + 305
99572..99646 (929..953) + 49

gi|2842524|emb|CAA16837|[fasta] (AL021746) retrotransposable element [Schizosaccharomyces pombe]
Length 1333 aa
position (link: detail on the area) subject position direction score
98966..99544 (531..723) + 44
100826..101050 (1006..1080) + 72

gi|130405|sp|P04323|POL3_DROME[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 17.6 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|74642|pir||GNFF17 retrovirus-related pol polyprotein - fruit fly (Drosophila melanogaster) transposon 17.6
gi|1335613|emb|CAA25702| (X01472) ORF 2, pot. reverse transcriptase [Drosophila melanogaster]
gi|224319|prf||1101404B ORF 2 [Drosophila melanogaster]
Length 1058 aa
position (link: detail on the area) subject position direction score
98960..99406 (329..477) + 86
99410..99559 (480..529) + 76
99572..99646 (530..554) + 54
99712..99804 (578..608) + 53

gi|280492|pir||S23570[fasta] pol polyprotein homolog - fungus (Cladosporium fulvum) transposon CfT-1 (fragment)
gi|2564|emb|CAA77891| (Z11866) Reverse Transcriptase [Cladosporium fulvum]
Length 1045 aa
position (link: detail on the area) subject position direction score
39815..39651 (932..986) - 103
40923..40786 (372..417) - 75
98960..99085 (438..479) + 137
99101..99646 (486..667) + 237
120690..120595 (172..203) - 58

gi|2791289|emb|CAA04050|[fasta] (AJ000387) protease [Drosophila melanogaster]
Length 1217 aa
position (link: detail on the area) subject position direction score
39827..39654 (974..1031) - 76
40923..40789 (372..416) - 92
98960..99646 (438..666) + 75
99697..99798 (685..718) + 54
115168..115251 (518..545) + 72
115354..115650 (580..678) + 88

gi|3493214[fasta] (AF056940) pol polyprotein [Drosophila virilis]
Length 1188 aa
position (link: detail on the area) subject position direction score
98960..99553 (445..642) + 55
99569..99646 (644..669) + 58
99697..99804 (688..723) + 42

gi|1825615[fasta] (U88169) similar to retrovirus-related POL polyprotein [Caenorhabditis elegans]
Length 1313 aa
position (link: detail on the area) subject position direction score
99056..99571 (460..631) + 62
100913..101050 (943..988) + 85

gi|4539436|emb|CAB40024.1|[fasta] (AL049523) putative reverse-transcriptase-like protein [Arabidopsis thaliana]
Length 1240 aa
position (link: detail on the area) subject position direction score
98966..99550 (610..804) + 72

gi|2995405|emb|CAA73042|[fasta] (Y12432) polyprotein [Ananas comosus]
Length 871 aa
position (link: detail on the area) subject position direction score
39619..39509 (720..756) - 72
39815..39651 (655..709) - 72
40923..40789 (68..112) - 89
98960..99556 (134..332) + 42
100883..101050 (638..693) + 67

gi|4263052|gb|AAD15321|[fasta] (AC005142) putative reverse transcriptase [Arabidopsis thaliana]
Length 839 aa
position (link: detail on the area) subject position direction score
98966..99550 (535..729) + 153

gi|4263542|gb|AAD15356|[fasta] (AC006250) putative retrotransposon pol protein [Arabidopsis thaliana]
Length 622 aa
position (link: detail on the area) subject position direction score
39628..39404 (547..621) - 270
39698..39651 (524..539) - 58
40403..40347 (505..523) - 63
40740..40636 (446..480) - 135
41390..41220 (91..147) - 160
98960..99076 (175..213) + 276
99161..99646 (238..399) + 221
99718..99798 (425..451) + 43

gi|3319351[fasta] (AF077407) contains similarity to reverse transcriptases (PFam: rvt.hmm, score: 116.22) [Arabidopsis thaliana]
Length 1322 aa
position (link: detail on the area) subject position direction score
39388..39284 (1156..1190) - 48
39619..39422 (1091..1156) - 75
39743..39651 (1050..1080) - 51
98966..99550 (642..836) + 91

gi|3810595[fasta] (AC005398) putative reverse-transcriptase [Arabidopsis thaliana]
Length 1328 aa
position (link: detail on the area) subject position direction score
39388..39284 (1165..1199) - 48
39619..39422 (1100..1165) - 72
39848..39651 (1024..1089) - 82
39970..39857 (982..1019) - 45
98966..99550 (585..779) + 40
100919..101050 (1030..1073) + 68

gi|4544430|gb|AAD22339.1|AC006955_25[fasta] (AC006955) putative reverse transcriptase [Arabidopsis thaliana]
Length 1411 aa
position (link: detail on the area) subject position direction score
39388..39284 (1245..1279) - 45
39619..39422 (1180..1245) - 83
39848..39651 (1104..1169) - 79
98966..99550 (636..830) + 80
100919..101050 (1110..1153) + 66

gi|4539665|gb|AAD22158.1|AF061282_11[fasta] (AF061282) polyprotein [Sorghum bicolor]
Length 924 aa
position (link: detail on the area) subject position direction score
39622..39509 (692..729) - 72
39845..39651 (618..682) - 91
40923..40789 (44..88) - 105
98960..99550 (110..306) + 109
99569..99622 (309..326) + 41

gi|1542877|emb|CAA65152|[fasta] (X95908) orf [Drosophila melanogaster]
Length 1494 aa
position (link: detail on the area) subject position direction score
39827..39663 (1320..1374) - 62
40923..40786 (767..812) - 113
98975..99046 (838..861) + 196
99056..99562 (866..1034) + 206

gi|1764013|emb|CAB06047|[fasta] (Z83760) COS41.3 [Ciona intestinalis]
Length 1209 aa
position (link: detail on the area) subject position direction score
17931..17987 (311..329) + 61
98960..99370 (558..694) + 211
99569..99646 (752..777) + 66
100916..101062 (972..1020) + 83

gi|1226168[fasta] (M32662) ORF B (bases 1850-5560) first start codon at 2306 [Autographa californica nucleopolyhedrovirus]
Length 1084 aa
position (link: detail on the area) subject position direction score
98975..115650 (265..500) + 91
98975..115650 (265..500) + 91
99697..99792 (507..538) + 59
115171..115254 (341..368) + 51

gi|522302[fasta] (L35053) endonuclease [Magnaporthe grisea]
Length 1199 aa
position (link: detail on the area) subject position direction score
39845..39651 (885..949) - 92
40929..40789 (291..337) - 95
98972..99565 (363..560) + 71
100931..101050 (894..933) + 66

gi|102939|pir||B36329[fasta] hypothetical protein 2 - cabbage looper transposon TED (fragment)
Length 1236 aa
position (link: detail on the area) subject position direction score
98975..99646 (417..640) + 73
99697..99792 (659..690) + 59
115171..115254 (493..520) + 51
115354..115650 (554..652) + 91

gi|3377853[fasta] (AF076274) No definition line found [Arabidopsis thaliana]
Length 331 aa
position (link: detail on the area) subject position direction score
94795..95034 (1..80) + 83
95173..95316 (96..143) + 123
97742..97816 (260..284) + 67

gi|2133292|pir||S60179[fasta] pol polyprotein homolog - fungus (Fusarium oxysporum) retrotransposon skippy
gi|510697 (L34658) pol polyprotein [Fusarium oxysporum]
Length 1295 aa
position (link: detail on the area) subject position direction score
39457..39335 (1107..1147) - 41
39661..39530 (1051..1094) - 55
39815..39651 (1000..1054) - 90
98966..99565 (441..640) + 66
99548..99646 (636..668) + 47

gi|4063760[fasta] (AC005561) putative POL3 protein [Arabidopsis thaliana]
Length 1215 aa
position (link: detail on the area) subject position direction score
98960..99553 (536..733) + 183
99560..99634 (732..756) + 37
99618..99647 (765..774) + 38

gi|2133581|pir||S68306[fasta] pol polyprotein, truncated - red flour beetle retrotransposon Woot
gi|805077 (U09586) protease, reverse transcriptase and RNase H [Tribolium castaneum]
Length 712 aa
position (link: detail on the area) subject position direction score
98957..99577 (421..627) + 38
99643..99708 (651..672) + 38
99694..99798 (669..703) + 45

gi|2522228|dbj|BAA22787|[fasta] (AB007466) reverse transcriptase-like protein [Vicia faba]
Length 407 aa
position (link: detail on the area) subject position direction score
40740..40669 (341..364) - 88
40920..40789 (1..44) - 211
98960..99634 (66..290) + 72
99685..99804 (309..348) + 48

gi|1030731|emb|CAA32198|[fasta] (X14037) polyprotein [Drosophila melanogaster]
Length 1053 aa
position (link: detail on the area) subject position direction score
98975..40789 (568..552) - 93
98975..40789 (568..552) - 93
41151..41044 (451..486) - 51

gi|1402848[fasta] (U60529) pol-like protein [Ceratitis capitata]
Length 1060 aa
position (link: detail on the area) subject position direction score
40926..40789 (250..295) - 91
41094..41044 (208..224) - 44
41262..41203 (148..167) - 40
98960..99397 (317..462) + 81
99452..99556 (493..527) + 41
99569..99646 (528..553) + 56
99712..99804 (578..608) + 44

gi|4165194|emb|CAA08807|[fasta] (AJ009736) Pol protein [Drosophila melanogaster]
Length 1150 aa
position (link: detail on the area) subject position direction score
98960..99406 (402..550) + 66
99425..99544 (558..597) + 64
99560..99646 (599..627) + 59
99697..99804 (646..681) + 40

gi|85056|pir||S02021[fasta] micropia polyprotein - fruit fly (Drosophila melanogaster) (fragment)
Length 1291 aa
position (link: detail on the area) subject position direction score
40923..40789 (508..552) - 93
41151..41044 (451..486) - 51
98975..99646 (568..791) + 200

gi|4432802|gb|AAD20654|[fasta] (AC006437) putative pol polyprotein, 5' partial [Arabidopsis thaliana]
Length 965 aa
position (link: detail on the area) subject position direction score
37494..37378 (927..965) - 104
37568..37515 (900..917) - 65
37889..37566 (792..899) - 496
38315..37932 (665..792) - 569
38624..38493 (579..622) - 193
38768..38646 (522..562) - 91
39424..39287 (483..528) - 199
39661..39425 (410..488) - 320
39851..39648 (347..414) - 323
40078..39857 (271..344) - 331
40457..40086 (145..268) - 562
40555..40466 (112..141) - 113
40639..40565 (87..111) - 82
40740..40639 (53..86) - 158
100475..100693 (209..281) + 40
100754..100798 (302..316) + 38
100823..101050 (322..397) + 74
101059..101235 (403..461) + 85
101320..101439 (485..524) + 48

gi|422418|pir||S34639[fasta] pol protein - fruit fly (Drosophila ananassae) transposon Tom (fragment)
gi|394705|emb|CAA80824| (Z24451) pol protein [Drosophila ananassae]
Length 1040 aa
position (link: detail on the area) subject position direction score
98960..99412 (289..439) + 103
99410..99559 (440..489) + 67

gi|4325361|gb|AAD17358|[fasta] (AF128395) contains similarity to reverse transcriptase (Pfam: PF00078, Score=137.6, E=2.3e-37, N=1) and CCHC-type zinc fingers (Pfam: PF00098, Score=18.3, E=0.024, N=2) [Arabidopsis thaliana]
Length 901 aa
position (link: detail on the area) subject position direction score
98966..99472 (499..667) + 196

gi|4512237|dbj|BAA75235.1|[fasta] (AB014746) polyprotein [Hordeum vulgare]
Length 265 aa
position (link: detail on the area) subject position direction score
99044..99559 (1..172) + 62

gi|4512247|dbj|BAA75238.1|[fasta] (AB014753) polyprotein [Morus bombycis]
Length 265 aa
position (link: detail on the area) subject position direction score
99044..99559 (1..172) + 68

gi|4512242|dbj|BAA75236.1|[fasta] (AB014750) polyprotein [Nicotiana tabacum]
Length 265 aa
position (link: detail on the area) subject position direction score
99044..99559 (1..172) + 83

gi|4557068|gb|AAD22507.1|AC007045_7[fasta] (AC007045) putative pol polyprotein [Arabidopsis thaliana]
Length 976 aa
position (link: detail on the area) subject position direction score
37494..37255 (893..972) - 224
37820..37566 (781..865) - 409
39577..39308 (685..774) - 440
39875..39648 (606..681) - 323
40060..39857 (544..611) - 316
40152..40081 (514..537) - 72
40460..40254 (431..499) - 314
40639..40463 (371..429) - 238
40740..40639 (337..370) - 143
40927..40838 (50..79) - 136
41160..41068 (3..33) - 77
99011..99646 (79..290) + 503
99718..99804 (316..344) + 52

gi|130398|sp|P20825|POL2_DROME[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 297 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|85089|pir||B24872 retrovirus-related pol polyprotein homolog - fruit fly (Drosophila melanogaster) transposon 297
Length 1059 aa
position (link: detail on the area) subject position direction score
98960..99406 (328..476) + 61
99425..99559 (484..528) + 62

gi|4512244|dbj|BAA75237.1|[fasta] (AB014751) polyprotein [Ipomoea nil]
Length 265 aa
position (link: detail on the area) subject position direction score
99044..99559 (1..172) + 79

gi|226407|prf||1510387A[fasta] retrotransposon del1-46 [Lilium henryi]
Length 1443 aa
position (link: detail on the area) subject position direction score
98960..99463 (639..806) + 79
99494..99553 (815..834) + 39

gi|2832245[fasta] (AF031569) hypothetical protein [Zea mays]
Length 224 aa
position (link: detail on the area) subject position direction score
40063..39947 (184..222) - 56
40286..40095 (110..173) - 99
100370..100789 (82..221) + 60

gi|4432810|gb|AAD20661|[fasta] (AC006570) putative pol polyprotein, 3' partial [Arabidopsis thaliana]
Length 469 aa
position (link: detail on the area) subject position direction score
13899..13609 (24..120) - 276
14933..14841 (1..31) - 132
18066..18149 (4..31) + 412
41390..41229 (224..277) - 153
41667..41602 (108..129) - 53
41916..41668 (24..106) - 230
44032..44280 (23..105) + 213
99110..99646 (273..451) + 229
120822..120490 (24..134) - 302
121880..121794 (3..31) - 129
124288..124620 (24..134) + 310

gi|4388825|gb|AAD19780|[fasta] (AC006528) putative pol polyprotein with reverse transcriptase domain (Pfam: PF00078) [Arabidopsis thaliana]
Length 841 aa
position (link: detail on the area) subject position direction score
13989..13663 (76..184) - 284
40394..40287 (795..830) - 108
40740..40639 (729..762) - 108
41154..40786 (367..489) - 414
41408..41163 (282..363) - 233
42075..41602 (53..210) - 344
43918..44310 (67..197) + 281
98960..99112 (510..560) + 113
99296..99610 (594..698) + 107
120957..120577 (61..187) - 317
124153..124533 (61..187) + 335
124543..124623 (190..216) + 42

gi|2435545[fasta] (AF026205) similar to retrovirus-related POL polyprotein [Caenorhabditis elegans]
Length 1350 aa
position (link: detail on the area) subject position direction score
98966..99037 (465..488) + 88
99056..99565 (493..662) + 216
99572..99646 (666..690) + 53
99754..99798 (733..747) + 44

gi|557718[fasta] (U15406) gag, pol and env protein precursor [Caenorhabditis elegans]
Length 2272 aa
position (link: detail on the area) subject position direction score
39622..39488 (1742..1786) - 61
39812..39648 (1680..1734) - 76
40923..40786 (1079..1124) - 93
98966..99484 (1147..1319) + 68
99566..99646 (1354..1380) + 57
99712..99798 (1404..1432) + 51

gi|84801|pir||S08405[fasta] hypothetical protein 2 - silkworm transposon mag
Length 1178 aa
position (link: detail on the area) subject position direction score
39595..39524 (945..968) - 38
39830..39681 (868..917) - 102
39922..39881 (838..851) - 47
98966..99034 (361..383) + 39
99056..99550 (389..553) + 204
99566..99646 (560..586) + 40
99748..99798 (627..643) + 53

gi|4567295|gb|AAD23707.1|AC006918_5[fasta] (AC006918) putative pol polyprotein [Arabidopsis thaliana]
Length 466 aa
position (link: detail on the area) subject position direction score
39628..39242 (287..415) - 488
39851..39648 (213..280) - 265
40078..39860 (137..209) - 281
40391..40041 (33..149) - 351
100577..100810 (109..186) + 200
100817..101050 (186..263) + 90
101059..101202 (269..316) + 55
101320..101436 (357..395) + 44
101443..101520 (396..421) + 61

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Entrance