BLASTX alignment cluster 7    (40570..43464)

Local alignments in this cluster

gi|4063760[fasta] (AC005561) putative POL3 protein [Arabidopsis thaliana]
Length 1215 aa
position (link: detail on the area) subject position direction score
40570..40863 (1..98) + 243
41026..41124 (152..184) + 112
41241..41309 (247..269) + 88
41337..41615 (268..360) + 240
41730..41918 (402..464) + 218
41993..42454 (464..617) + 642
43357..43464 (1163..1198) + 77
77244..77128 (733..771) - 48
77730..77248 (575..735) - 148
78047..77826 (463..536) - 151

gi|4235644[fasta] (AF119040) polyprotein [Lycopersicon esculentum]
Length 1542 aa
position (link: detail on the area) subject position direction score
41748..41930 (575..635) + 163
41930..42454 (636..810) + 461
75872..75537 (1213..1324) - 112
76145..76026 (1120..1159) - 66
77730..77254 (768..926) - 243
78047..77826 (656..729) - 116

gi|2995405|gnl|PID|e312296[fasta] (Y12432) polyprotein [Ananas comosus]
Length 871 aa
position (link: detail on the area) subject position direction score
41817..41942 (3..44) + 112
41930..42433 (41..208) + 504
75851..75546 (654..755) - 126
76145..76026 (553..592) - 62
77730..77248 (173..333) - 197
78071..77832 (53..132) - 178

gi|3319351[fasta] (AF077407) contains similarity to reverse transcriptases (PFam: rvt.hmm, score: 116.22) [Arabidopsis thaliana]
Length 1322 aa
position (link: detail on the area) subject position direction score
41805..41927 (505..545) + 121
41930..42433 (547..714) + 464
77088..77008 (890..916) - 41
77238..77128 (839..875) - 39
77730..77248 (679..839) - 191
77829..77764 (643..664) - 56
78071..77826 (559..640) - 156

gi|226407|prf||1510387A[fasta] retrotransposon del1-46 [Lilium henryi]
Length 1443 aa
position (link: detail on the area) subject position direction score
41739..41813 (486..510) + 54
41799..41942 (505..552) + 112
41930..42025 (549..580) + 86
42035..42109 (583..607) + 78
42116..42163 (609..624) + 61
42179..42454 (629..720) + 252
77733..77344 (677..806) - 160
77829..77728 (642..675) - 57
77999..77931 (584..606) - 47
78071..78009 (561..581) - 40

show all (45) hits

   gi|3810595
   gi|522302
   gi|1084606|pir||S53577
   gi|2133196|pir||S69842
   gi|1326016
   gi|173088
   gi|763265
   gi|1945323|gnl|PID|e243484
   gi|536873
   gi|3510505
   gi|3688328|gnl|PID|e1329638
   gi|1658457
   gi|538067
   gi|280492|pir||S23570
   gi|101042|pir||A36373
   gi|478289|pir||JN0791
   gi|2842524|gnl|PID|e1250012
   gi|1710054|sp|Q05654|RDPO_SCHPO
   gi|130405|sp|P04323|POL3_DROME
   gi|2133292|pir||S60179
   gi|130398|sp|P20825|POL2_DROME
   gi|422418|pir||S34639
   gi|4165194|gnl|PID|e1371477
   gi|401036|sp|P31843|RRPO_OENBE
   gi|3493214
   gi|1402848
   gi|225731|prf||1312271A
   gi|1226168
   gi|102939|pir||B36329
   gi|557718
   gi|2791289|gnl|PID|e1237234
   gi|4206306
   gi|2133676|pir||S70430
   gi|4206309
   gi|130407|sp|P10394|POL4_DROME
   gi|2522228|dbj||AB007466_2
   gi|84801|pir||S08405
   gi|1085915|pir||S52564
   gi|3695395
   gi|4115365

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