BLASTX alignment cluster 7    (40570..43464)

Local alignments in this cluster

gi|4063760[fasta] (AC005561) putative POL3 protein [Arabidopsis thaliana]
Length 1215 aa
position (link: detail on the area) subject position direction score
40570..40863 (1..98) + 243
41026..41124 (152..184) + 112
41241..41309 (247..269) + 88
41337..41615 (268..360) + 240
41730..41918 (402..464) + 218
41993..42454 (464..617) + 642
43357..43464 (1163..1198) + 77
77244..77128 (733..771) - 48
77730..77248 (575..735) - 148
78047..77826 (463..536) - 151

gi|4235644[fasta] (AF119040) polyprotein [Lycopersicon esculentum]
Length 1542 aa
position (link: detail on the area) subject position direction score
41748..41930 (575..635) + 163
41930..42454 (636..810) + 461
75872..75537 (1213..1324) - 112
76145..76026 (1120..1159) - 66
77730..77254 (768..926) - 243
78047..77826 (656..729) - 116

gi|2995405|gnl|PID|e312296[fasta] (Y12432) polyprotein [Ananas comosus]
Length 871 aa
position (link: detail on the area) subject position direction score
41817..41942 (3..44) + 112
41930..42433 (41..208) + 504
75851..75546 (654..755) - 126
76145..76026 (553..592) - 62
77730..77248 (173..333) - 197
78071..77832 (53..132) - 178

gi|3319351[fasta] (AF077407) contains similarity to reverse transcriptases (PFam: rvt.hmm, score: 116.22) [Arabidopsis thaliana]
Length 1322 aa
position (link: detail on the area) subject position direction score
41805..41927 (505..545) + 121
41930..42433 (547..714) + 464
77088..77008 (890..916) - 41
77238..77128 (839..875) - 39
77730..77248 (679..839) - 191
77829..77764 (643..664) - 56
78071..77826 (559..640) - 156

gi|226407|prf||1510387A[fasta] retrotransposon del1-46 [Lilium henryi]
Length 1443 aa
position (link: detail on the area) subject position direction score
41739..41813 (486..510) + 54
41799..41942 (505..552) + 112
41930..42025 (549..580) + 86
42035..42109 (583..607) + 78
42116..42163 (609..624) + 61
42179..42454 (629..720) + 252
77733..77344 (677..806) - 160
77829..77728 (642..675) - 57
77999..77931 (584..606) - 47
78071..78009 (561..581) - 40

gi|3810595[fasta] (AC005398) putative reverse-transcriptase [Arabidopsis thaliana]
Length 1328 aa
position (link: detail on the area) subject position direction score
41802..41930 (459..501) + 123
41975..42433 (505..657) + 439
77088..77008 (833..859) - 40
77238..77104 (782..826) - 40
77730..77248 (622..782) - 196
77829..77728 (586..619) - 57
78050..77826 (509..583) - 146

gi|522302[fasta] (L35053) endonuclease [Magnaporthe grisea]
Length 1199 aa
position (link: detail on the area) subject position direction score
41769..41942 (212..269) + 171
41930..42433 (266..433) + 452
77253..77113 (558..604) - 54
77730..77263 (398..553) - 171
77829..77773 (362..380) - 59
78050..77826 (285..359) - 131

gi|1084606|pir||S53577[fasta] TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty3-2
Length 1498 aa
position (link: detail on the area) subject position direction score
41823..77134 (610..974) + 37
41823..77134 (610..974) + 37
41930..42286 (646..764) + 323
42299..42454 (767..818) + 112
77409..77335 (881..905) - 49
77730..77464 (776..864) - 103
77832..77764 (741..763) - 46
78056..77820 (663..741) - 180

gi|2133196|pir||S69842[fasta] TyB protein - yeast (Saccharomyces cerevisiae) retrotransposon Ty3.GR
Length 1547 aa
position (link: detail on the area) subject position direction score
41823..41930 (584..619) + 61
41930..42286 (620..738) + 323
42299..42454 (741..792) + 112
77226..77134 (918..948) - 37
77409..77335 (855..879) - 47
77730..77464 (750..838) - 103
77832..77764 (715..737) - 46
78056..77820 (637..715) - 180

gi|1326016[fasta] (Z46728) YI9910.15, incomplete TY3-2 orfB, len:
1099, CAI: 0.13 [Saccharomyces cerevisiae]
Length 1099 aa
position (link: detail on the area) subject position direction score
41823..77134 (333..697) + 37
41823..77134 (333..697) + 37
41930..42286 (369..487) + 323
42299..42454 (490..541) + 112
77409..77335 (604..628) - 49
77730..77464 (499..587) - 103
77832..77764 (464..486) - 46
78056..77820 (386..464) - 180

gi|173088[fasta] (M23367) has homology to retroviral pol genes; ORF2 TYB3-2 (5' end of coding region not precisely determined) [Saccharomyces cerevisiae]
Length 1221 aa
position (link: detail on the area) subject position direction score
41823..77134 (333..697) + 37
41823..77134 (333..697) + 37
41930..42286 (369..487) + 323
42299..42454 (490..541) + 112
77409..77335 (604..628) - 49
77730..77464 (499..587) - 103
77832..77764 (464..486) - 46
78056..77820 (386..464) - 180

gi|763265[fasta] (Z47047) unknown [Saccharomyces cerevisiae]
Length 1221 aa
position (link: detail on the area) subject position direction score
41823..77134 (333..697) + 37
41823..77134 (333..697) + 37
41930..42286 (369..487) + 323
42299..42454 (490..541) + 112
77409..77335 (604..628) - 49
77730..77464 (499..587) - 103
77832..77764 (464..486) - 46
78056..77820 (386..464) - 180

gi|1945323|gnl|PID|e243484[fasta] (Z72894) TY3B [Saccharomyces cerevisiae]
gi|1945324|gnl|PID|e243453 (Z72895) TY3B [Saccharomyces cerevisiae]
Length 1547 aa
position (link: detail on the area) subject position direction score
41823..77134 (584..948) + 37
41823..77134 (584..948) + 37
41930..42286 (620..738) + 323
42299..42454 (741..792) + 112
77409..77335 (855..879) - 47
77730..77464 (750..838) - 103
77832..77764 (715..737) - 46
78056..77820 (637..715) - 180

gi|536873[fasta] (M34549) POL3 gene product [Saccharomyces cerevisiae]
Length 1270 aa
position (link: detail on the area) subject position direction score
41823..77134 (307..671) + 37
41823..77134 (307..671) + 37
41930..42286 (343..461) + 323
42299..42454 (464..515) + 112
77409..77335 (578..602) - 47
77730..77464 (473..561) - 103
77832..77764 (438..460) - 46
78056..77820 (360..438) - 180

gi|3510505[fasta] (AF030881) pol polyprotein [Fugu rubripes]
Length 1187 aa
position (link: detail on the area) subject position direction score
41778..41927 (250..299) + 264
41939..42439 (304..470) + 423
75866..75621 (877..958) - 130
76145..76026 (782..821) - 67
77730..77236 (433..597) - 184
77832..77728 (396..430) - 67
78050..77820 (320..396) - 116

gi|3688328|gnl|PID|e1329638[fasta] (AJ228325) reverse transcriptase [Ginkgo biloba]
Length 138 aa
position (link: detail on the area) subject position direction score
42014..42427 (1..138) + 69
77829..77659 (69..125) - 78
78023..77832 (1..64) - 133

gi|1658457[fasta] (U75248) reverse transcriptase [Gossypium barbadense]
Length 103 aa
position (link: detail on the area) subject position direction score
42161..42454 (1..98) + 119

gi|538067[fasta] (M77661) putative pol polyprotein [Magnaporthe grisea]
Length 1398 aa
position (link: detail on the area) subject position direction score
41769..41822 (324..341) + 148
41856..41942 (359..387) + 48
41930..42340 (384..520) + 368
42320..42433 (515..552) + 44
77247..77155 (680..710) - 39
77577..77329 (569..651) - 72
77730..77587 (517..564) - 50
77829..77767 (480..500) - 58
78056..77826 (401..477) - 142

gi|280492|pir||S23570[fasta] pol polyprotein homolog - fungus (Cladosporium fulvum) transposon CfT-1 (fragment)
gi|2564 (Z11866) Reverse Transcriptase [Cladosporium fulvum]
Length 1045 aa
position (link: detail on the area) subject position direction score
41766..41954 (290..352) + 129
41936..42343 (347..482) + 364
42320..42433 (476..513) + 42
77052..76882 (706..762) - 37
77706..77122 (486..680) - 199
77829..77728 (441..474) - 52
78050..77826 (364..438) - 100

gi|101042|pir||A36373[fasta] hypothetical protein Tf1 - fission yeast (Schizosaccharomyces pombe)
gi|173477 (M38526) Tf1 protein [Schizosaccharomyces pombe]
Length 1330 aa
position (link: detail on the area) subject position direction score
41930..42433 (433..600) + 86
75962..75567 (1001..1132) - 87
76145..76026 (938..977) - 54
77730..77263 (565..720) - 215
77832..77728 (528..562) - 55
78050..77820 (452..528) - 127

gi|478289|pir||JN0791[fasta] Tf2 protein, Retrotransposon - fission yeast (Schizosaccharomyces pombe)
gi|173439 (L10324) protease, reverse transcriptase, RNAse H, integrase protein [Schizosaccharomyces pombe]
gi|2388948|gnl|PID|e340018 (Z98978) hypothetical protein [Schizosaccharomyces pombe]
Length 1333 aa
position (link: detail on the area) subject position direction score
41930..75567 (436..1135) + 86
41930..75567 (436..1135) + 86
76031..75930 (980..1013) - 38
76181..76056 (929..970) - 50
77730..77263 (568..723) - 217
77832..77728 (531..565) - 55
78050..77820 (455..531) - 127

gi|2842524|gnl|PID|e1250012[fasta] (AL021746) retrotransposable element [Schizosaccharomyces pombe]
Length 1333 aa
position (link: detail on the area) subject position direction score
41930..42433 (436..603) + 133
75842..75567 (1044..1135) - 86
76031..75930 (980..1013) - 38
76181..76056 (929..970) - 50
77730..77263 (568..723) - 209
77832..77728 (531..565) - 55
78050..77820 (455..531) - 127

gi|1710054|sp|Q05654|RDPO_SCHPO[fasta] RETROTRANSPOSABLE ELEMENT TF2 155 KD PROTEIN
gi|1177360|gnl|PID|e220685 (Z69240) SPAC26A3.13c, len: 1333, PIR:JN0791 retrotransposon Tf2 protein, contains PS00141 Eukaryotic and viral aspartyl proteases active site [Schizosaccharomyces pombe]
Length 1333 aa
position (link: detail on the area) subject position direction score
41930..75567 (436..1135) + 86
41930..75567 (436..1135) + 86
76031..75930 (980..1013) - 38
76181..76056 (929..970) - 50
77730..77263 (568..723) - 217
77832..77728 (531..565) - 55
78050..77820 (455..531) - 127

gi|130405|sp|P04323|POL3_DROME[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 17.6 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|74642|pir||GNFF17 retrovirus-related pol polyprotein - fruit fly (Drosophila melanogaster) transposon 17.6
gi|1335613|gnl|PID|e1849 (X01472) ORF 2, pot. reverse transcriptase [Drosophila melanogaster]
gi|224319|prf||1101404B ORF 2 [Drosophila melanogaster]
Length 1058 aa
position (link: detail on the area) subject position direction score
41930..41998 (231..253) + 124
42008..42454 (262..410) + 331
77118..77002 (570..608) - 59
77235..77128 (530..565) - 60
77730..77329 (368..501) - 137
77832..77728 (331..365) - 74
78032..77820 (261..331) - 110

gi|2133292|pir||S60179[fasta] pol polyprotein homolog - fungus (Fusarium oxysporum) retrotransposon skippy
gi|510697 (L34658) pol polyprotein [Fusarium oxysporum]
Length 1295 aa
position (link: detail on the area) subject position direction score
41769..41942 (291..348) + 122
41930..41995 (345..366) + 61
42011..42433 (373..513) + 324
77259..77128 (636..679) - 70
77730..77251 (478..637) - 170
77832..77767 (441..462) - 56
78053..77820 (364..441) - 127

gi|130398|sp|P20825|POL2_DROME[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 297 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|85089|pir||B24872 retrovirus-related pol polyprotein homolog - fruit fly (Drosophila melanogaster) transposon 297
Length 1059 aa
position (link: detail on the area) subject position direction score
41930..41998 (230..252) + 114
42008..42433 (261..402) + 322
77235..77053 (529..589) - 65
77382..77263 (484..523) - 55
77730..77401 (367..476) - 123
77832..77728 (330..364) - 72
78032..77820 (260..330) - 108

gi|422418|pir||S34639[fasta] pol protein - fruit fly (Drosophila ananassae) transposon Tom (fragment)
gi|394705 (Z24451) pol protein [Drosophila ananassae]
Length 1040 aa
position (link: detail on the area) subject position direction score
41930..41998 (191..213) + 46
42008..42454 (222..370) + 318
77382..77251 (445..488) - 60
77730..77449 (328..421) - 139
77832..77728 (291..325) - 71
78032..77820 (221..291) - 114

gi|4165194|gnl|PID|e1371477[fasta] (AJ009736) Pol protein [Drosophila melanogaster]
Length 1150 aa
position (link: detail on the area) subject position direction score
41930..41998 (304..326) + 65
42008..42433 (335..476) + 315
77052..77002 (665..681) - 46
77238..77128 (602..638) - 63
77382..77263 (558..597) - 63
77730..77464 (441..529) - 138
77823..77728 (407..438) - 69
78032..77820 (334..404) - 114

gi|401036|sp|P31843|RRPO_OENBE[fasta] RNA-DIRECTED DNA POLYMERASE HOMOLOG (REVERSE TRANSCRIPTASE HOMOLOG)
gi|74648|pir||RROBHM RNA-directed DNA polymerase homolog - evening primrose mitochondrion
gi|13197 (X06034) reverse transcriptose-like protein (AA 1-143) [Oenothera berteriana]
Length 142 aa
position (link: detail on the area) subject position direction score
42011..42337 (7..115) + 87
77736..77683 (113..130) - 35
77826..77728 (77..109) - 50
78026..77817 (7..76) - 99

gi|3493214[fasta] (AF056940) pol polyprotein [Drosophila virilis]
Length 1188 aa
position (link: detail on the area) subject position direction score
41963..42001 (358..370) + 71
42008..42433 (378..519) + 311
77109..77002 (688..723) - 49
77244..77128 (642..680) - 69
77379..77248 (601..644) - 66
77730..77410 (484..590) - 145
77823..77728 (450..481) - 63
78032..77820 (377..447) - 123

gi|1402848[fasta] (U60529) pol-like protein [Ceratitis capitata]
Length 1060 aa
position (link: detail on the area) subject position direction score
42008..42433 (250..391) + 35
77244..77128 (526..564) - 76
77340..77248 (498..528) - 39
77730..77410 (356..462) - 158
77823..77728 (322..353) - 55
78071..77847 (236..310) - 108

gi|225731|prf||1312271A[fasta] nuclear 18S rRNA [Oenothera sp.]
Length 142 aa
position (link: detail on the area) subject position direction score
42011..42337 (7..115) + 111
77736..77683 (113..130) - 35
77826..77728 (77..109) - 50
78026..77817 (7..76) - 103

gi|1226168[fasta] (M32662) ORF B (bases 1850-5560) first start codon at 2306 [Autographa californica nucleopolyhedrovirus]
Length 1084 aa
position (link: detail on the area) subject position direction score
41930..77014 (162..538) + 60
41930..77014 (162..538) + 60
42008..42433 (193..334) + 298
77730..77128 (299..499) - 217
77829..77767 (263..283) - 55
78071..77826 (179..260) - 128

gi|102939|pir||B36329[fasta] hypothetical protein 2 - cabbage looper transposon TED (fragment)
Length 1236 aa
position (link: detail on the area) subject position direction score
41930..41998 (314..336) + 87
42008..42433 (345..486) + 298
77109..77014 (659..690) - 60
77730..77128 (451..651) - 217
77829..77767 (415..435) - 55
78071..77826 (331..412) - 128

gi|557718[fasta] (U15406) gag, pol and env protein precursor [Caenorhabditis elegans]
Length 2272 aa
position (link: detail on the area) subject position direction score
41930..42427 (1052..1217) + 159
77091..77008 (1405..1432) - 53
77247..77104 (1352..1399) - 58
77730..77308 (1184..1324) - 158
78071..77826 (1064..1145) - 151

gi|2791289|gnl|PID|e1237234[fasta] (AJ000387) protease [Drosophila melanogaster]
Length 1217 aa
position (link: detail on the area) subject position direction score
41912..41998 (334..362) + 148
41972..42454 (359..519) + 294
77109..76996 (685..722) - 52
77730..77128 (477..677) - 239
77823..77767 (443..461) - 58
78071..77832 (357..436) - 140

gi|4206306[fasta] (AF049110) prpol [Zea mays]
Length 1317 aa
position (link: detail on the area) subject position direction score
41981..42466 (354..515) + 35
75299..75168 (1273..1316) - 102
75299..75168 (1273..1316) - 102
75299..75168 (1273..1316) - 102
75686..75519 (1149..1204) - 92
75686..75519 (1149..1204) - 92
75965..75678 (1055..1150) - 195
75965..75678 (1055..1150) - 195
76337..75972 (930..1051) - 254
76337..75972 (930..1051) - 254
76941..76525 (738..876) - 172
76941..76525 (738..876) - 172
77244..76960 (635..729) - 211
77244..76960 (635..729) - 211
77730..77254 (469..627) - 369
77730..77254 (469..627) - 369
77832..77728 (432..466) - 70
77832..77728 (432..466) - 70
78365..77820 (251..432) - 457
78365..77820 (251..432) - 457
78722..78552 (153..209) - 104
78722..78552 (153..209) - 104
78999..78841 (60..112) - 116
78999..78841 (60..112) - 116

gi|2133676|pir||S70430[fasta] hypothetical protein 4 - fruit fly (Drosophila melanogaster) retrotransposon mgd1
Length 1186 aa
position (link: detail on the area) subject position direction score
41877..41954 (268..293) + 99
41930..41998 (286..308) + 52
42008..42433 (318..459) + 237
75875..75651 (963..1037) - 69
76226..75972 (845..929) - 76
77730..77104 (424..632) - 250
77835..77761 (386..410) - 46
78032..77820 (317..387) - 124

gi|4206309[fasta] (AF049112) prpol [Zea mays]
Length 479 aa
position (link: detail on the area) subject position direction score
42065..42466 (3..136) + 156
76911..76579 (369..479) - 145
76911..76579 (369..479) - 145
76911..76579 (369..479) - 145
77235..76960 (259..350) - 209
77235..76960 (259..350) - 209
77730..77254 (90..248) - 371
77730..77254 (90..248) - 371
77832..77728 (53..87) - 70
77832..77728 (53..87) - 70
77975..77820 (2..53) - 149
77975..77820 (2..53) - 149

gi|130407|sp|P10394|POL4_DROME[fasta] RETROVIRUS-RELATED POL POLYPROTEIN FROM TRANSPOSON 412 [CONTAINS: PROTEASE ; REVERSE TRANSCRIPTASE ; ENDONUCLEASE]
gi|74644|pir||GNFF42 retrovirus-related pol polyprotein - fruit fly (Drosophila melanogaster) transposon 412
gi|1335652|gnl|PID|e1912 (X04132) ORF 4 (RNA2) [Drosophila melanogaster]
Length 1237 aa
position (link: detail on the area) subject position direction score
41945..41998 (343..360) + 110
42008..42433 (370..511) + 231
75830..75546 (1029..1123) - 76
76226..75972 (896..980) - 90
77730..77128 (476..676) - 233
78032..77826 (369..437) - 126

gi|2522228|dbj||AB007466_2[fasta] (AB007466) reverse transcriptase-like protein [Vicia faba]
Length 407 aa
position (link: detail on the area) subject position direction score
42014..42433 (1..140) + 75
77121..76975 (309..357) - 61
77697..77104 (116..313) - 201
77823..77728 (71..102) - 79
78023..77817 (1..69) - 184

gi|84801|pir||S08405[fasta] hypothetical protein 2 - silkworm transposon mag
Length 1178 aa
position (link: detail on the area) subject position direction score
41960..42043 (275..302) + 59
42035..42289 (301..385) + 133
42305..42433 (389..431) + 89
77058..77008 (627..643) - 60
77244..77104 (559..605) - 65
77730..77230 (396..562) - 170
77999..77820 (302..361) - 112
78209..78009 (231..297) - 67

gi|1085915|pir||S52564[fasta] hypothetical protein 2 (clone Db314) - fruit fly (Drosophila buzzatii) retrotransposon Osvaldo
Length 754 aa
position (link: detail on the area) subject position direction score
42062..42190 (63..105) + 133
42200..42454 (110..194) + 133
75962..75726 (571..649) - 87
76145..75948 (509..574) - 96
77118..76975 (356..403) - 74
77379..77101 (268..360) - 134
77727..77464 (153..240) - 130
77987..77847 (59..105) - 65

gi|3695395[fasta] (AF096372) contains similarity to reverse transcriptase (Pfam: PF00078 rvt, E=4.3e-08) [Arabidopsis thaliana]
Length 637 aa
position (link: detail on the area) subject position direction score
41981..42205 (383..457) + 930
42236..42433 (453..518) + 88
77472..77248 (563..637) - 243
77727..77479 (484..566) - 262
77811..77734 (453..478) - 66
78239..77832 (322..457) - 478
78776..78552 (242..316) - 218
79164..78862 (130..230) - 190
80246..80013 (1..78) - 135

gi|4115365[fasta] (AC005957) reverse transcriptase-like protein [Arabidopsis thaliana]
Length 1329 aa
position (link: detail on the area) subject position direction score
41981..42247 (474..562) + 65
75926..75168 (1076..1328) - 678
76337..75975 (952..1072) - 401
76389..76333 (929..947) - 60
76695..76471 (789..863) - 194
77190..76981 (694..763) - 257
77415..77209 (626..694) - 184
78236..77817 (414..553) - 511
78776..78579 (348..413) - 195
79710..79588 (282..322) - 91
79890..79819 (252..275) - 60
80330..79884 (104..252) - 256

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