information on T27D20    (77829..77764)

Direction: -

Frame: 2

ORF

    77997..76780  (Met: 77730 77715 77535 77181 77154 77103 77094 76944)
QSLPERQLPITAHRSPRRINFWKQVAIIHGRFRRLQPDHDEPRGSRKNRILHGTRHLLLP
IGLKNAGATYQRFVNKIFALQIKKTIEVYMLVKSMAEEEHVSHLRECFQQLNLYNVKLNP
AKCRFRVRSGEFLGYLVTHRGIEANPKQIEALLGMASPQNKREVQRLTERVAALNRFISR
STDKCLAFYDVLRGNKKFEWTTRCGEAFQELKKYLATPPILAKPVIREPLYLYIAVSDTA
VSGVLIREDRGEQKPIFYVSQTFTGAESCYPQMEKLALAVIMSARKLRPYCQSHSIIVMG
SMPLRAILHSPSQSGRLAKWAIKLSEYDIEYRNKTCAKSQVLADFIVKLPFMEARENPLD
TTWLLHVDGSSSKQSLGVGIRLTSPTGEVLEQSFRLNFEGTNNVAE

GenBank annotation

    None

BLASTX cluster

    80273..75168    cluster 17    61 hits for protein gene

BLASTN cluster

    None

GENSCAN

    80389..75165    gene model 16
    Suboptimal exon

        77944..76780    Term    Phase: 2    Score: 0.181
        77944..76789    Intr    Phase: 2    Score: 0.251

Grail

    77285..76777    exon    Phase: 1    Score: 86
    77535..76777    exon    Phase: 0    Score: 33

Exon-Intron boundary candidatates

Acceptor
76799 [0.003] (1) 76862 [0.045] (1) 76895 [0.002] (1) 76938 [0.006] (0)
76977 [0.009] (0) 77068 [0.004] (2) 77159 [0.007] (1) 77214 [0.035] (0)
77252 [0.001] (1) 77276 [0.006] (1) 77285 [0.013] (1) 77370 [0.009] (0)
77502 [0.002] (0) 77520 [0.002] (0) 77537 [0.003] (1) 77620 [0.005] (2)
77636 [0.002] (1) 77667 [0.018] (0) 77670 [0.003] (0) 77708 [0.036] (1)
77754 [0.176] (0) 77885 [0.012] (1) 77992 [0.001] (2)
Donor
76834 [0.023] (0) 76978 [0.011] (0) 77021 [0.020] (2) 77205 [0.012] (1)
77326 [0.043] (0) 77597 [0.009] (2) 77620 [0.076] (0)

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