information on T27D20    (41799..41942)

Direction: +

Frame: 3

ORF

    41379..42502  (Met: 41442 41598 41664 41691 41883 42014 42086 42158 42224 42260 42269 41931)
QVTVSFSVGKYHDQVVCDVVPMRVGHLLLGRPWQFDRATCHNRRTNHYSFTYNDRKYNLA
PLSPLEVHDLQIHMNKEHEVRSSSLYLSSKDVCKTMSAKGTVLLMVFKECLSTGIGDPEL
SAEVQVVLHWYKDLFPEEIPPGLPPIRGIEQQIDLVPGSALPNKPAYRMNPEESKELEKQ
VSDL*KGYIRESLSPCAVPVLLVPKKDGTWRMCLDCRAINNITIKYRHPIPRLYDMLDEL
SGAIIFSKVDLRSGYHQVRMREGDEWKTAFKTKQGLYECLVMPFGLTNAPSTFMRLMNQV
LRSFIGKFVVVYFDDILIYNKSYSDHIQPLELILKTLRKEGLYANLKKCTFCSDKFFFPI
CVYDFYVNILLIIN

GenBank annotation

    41442..42505    T27D20.2

BLASTX cluster

    40570..43464    cluster 7    45 hits for protein gene

BLASTN cluster

    None

GENSCAN

    40052..46670    gene model 9
    Suboptimal exon

        41383..41541    Intr    Phase: 1    Score: 0.200
        41575..41918    Intr    Phase: 1    Score: 0.139

Grail

    41399..41615    exon    Phase: 2    Score: 62
    41664..41918    exon    Phase: 0    Score: 83

Exon-Intron boundary candidatates

Acceptor
41437 [0.003] (1) 41642 [0.003] (2) 41650 [0.002] (1) 41676 [0.002] (0)
41719 [0.410] (1) 41725 [0.005] (1) 41851 [0.147] (1) 41882 [0.002] (2)
41934 [0.003] (0) 41950 [0.001] (1) 42126 [0.009] (0) 42152 [0.471] (2)
42168 [0.002] (0) 42344 [0.002] (2) 42372 [0.86N] (0)
Donor
41541 [1.00N/0.477] (1) 41615 [1.00N/0.985] (0) 41724 [0.022] (1) 41918 [0.128] (0)
41940 [0.029] (1) 42151 [0.009] (2) 42203 [0.027] (0) 42277 [0.918] (2)
42285 [0.923] (1) 42296 [0.92N/0.816] (0) 42401 [0.222] (0) 42444 [0.004] (1)
42463 [0.012] (2)

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