information on T27D20    (41337..41615)

Direction: +

Frame: 3

ORF

    41235..41930  (Met: 41241 41286 41442 41598 41664 41691 41883 41376 41429 41434)
PRMIIDGGSCTNVASKYMVDRLGLQKTKHPRPYKLRWLNDDTELKLA*SDRIIQRGKVPR
SSRL**PMRVGHLLLGRPWQFDRATCHNRRTNHYSFTYNDRKYNLAPLSPLEVHDLQIHM
NKEHEVRSSSLYLSSKDVCKTMSAKGTVLLMVFKECLSTGIGDPELSAEVQVVLHWYKDL
FPEEIPPGLPPIRGIEQQIDLVPGSALPNKPAYRMNPEESKELEKQVSDL

GenBank annotation

    40097..41244    T27D20.19    41442..42505    T27D20.2

BLASTX cluster

    40570..43464    cluster 7    45 hits for protein gene

BLASTN cluster

    None

GENSCAN

    40052..46670    gene model 9

    Suboptimal exon

        41383..41541    Intr    Phase: 1    Score: 0.200
        41575..41918    Intr    Phase: 1    Score: 0.139

Grail

    41241..41296    exon    Phase: 0    Score: 31
    41399..41615    exon    Phase: 2    Score: 62
    41664..41918    exon    Phase: 0    Score: 83

Exon-Intron boundary candidatates

Acceptor
41279 [0.007] (2) 41293 [0.010] (1) 41297 [0.617] (2) 41302 [0.005] (1)
41310 [0.068] (0) 41437 [0.003] (1) 41642 [0.003] (2) 41650 [0.002] (1)
41676 [0.002] (0) 41719 [0.410] (1) 41725 [0.005] (1) 41851 [0.147] (1)
41882 [0.002] (2)
Donor
41256 [0.013] (1) 41296 [0.026] (2) 41341 [0.019] (2) 41541 [1.00N/0.477] (1)
41615 [1.00N/0.985] (0) 41724 [0.022] (1) 41918 [0.128] (0)

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