HUGE

Gene/Protein Characteristic Table for KIAA1944

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07144
Accession No. :	AB075824
Description :	Transmembrane protein 132D precursor.
HUGO Gene Name :	transmembrane protein 132D (TMEM132D)
Clone Name :	fh11215 [Vector Info]
Flexi ORF Clone :	pF1KA1944
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 5305 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
NO

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 2150 bp

Genome contig ID gi89161190r_128022223
PolyA signal sequence
(TATAAA,-23)
+----*----+----*----+----*----+----
ACTGACTGTAAATATAAAGTTTGCATTCAGTGGCT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
TTATGGCTGTCCTTTGTCTTCTACACGCTGACCCCCTCCAAGGGGCTGGC

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 r 128122223 128136498 4 99.4 Perfect prediction

Features of the protein sequence	Description

Length: 657 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW98500	100.0	transmembrane p...	Homo sapiens
Q14C87	99.8	Transmembrane p...	Homo sapiens
BAC97794	99.7	HBE120 [Homo sa...	Homo sapiens
AAI14627	99.7	TMEM132D protei...	Homo sapiens
XP_001107847	97.9	similar to CG14...	Macaca mulatta

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB067493	1.8e-71	52.5	KIAA1906

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

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Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 478 MYALLGVFCLAILVFLINCVTFA 500 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	478	MYALLGVFCLAILVFLINCVTFA	500	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: ACGGAGCTGATAAATGACTTC

Primer_r
: GTCTTTTCAGCGAGGATGGTG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	NO
Warning for coding interruption:	NO

Length of 3'UTR	2150 bp
Genome contig ID	gi89161190r_128022223
PolyA signal sequence (TATAAA,-23)	+--------+--------+----*----+---- ACTGACTGTAAATATAAAGTTTGCATTCAGTGGCT
Flanking genome sequence (100000 - 99951)	----+--------+--------+--------+--------+----* TTATGGCTGTCCTTTGTCTTCTACACGCTGACCCCCTCCAAGGGGCTGGC

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	r	128122223	128136498	4	99.4	Perfect prediction

Primer_f	: ACGGAGCTGATAAATGACTTC
Primer_r	: GTCTTTTCAGCGAGGATGGTG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1944

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information