HUGE

Gene/Protein Characteristic Table for KIAA1906

Link to : GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07143
Accession No. :	AB067493
Description :	Transmembrane protein 132B.
HUGO Gene Name :	transmembrane protein 132B (TMEM132B)
Clone Name :	ah00281 [Vector Info]
Source :	Human brain (amygdala)

Features of the cloned DNA sequence	Description

Length: 6113 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 4331 bp

Genome contig ID gi89161190f_124594608
PolyA signal sequence
(AATAAA,-19)
+----*----+----*----+----*----+----
TCGTTTTTAACATGAAAATAAACATTTAAACATTC
Flanking genome sequence
(114936 - 114985)
----+----*----+----*----+----*----+----*----+----*
TTCAGTTGTTTCATTATTTTATCTGCATGTTCCATAAAGCAGCTGTATGG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 12 f 124694608 124709542 4 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 593 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q14DG7	100.0	Transmembrane p...	Homo sapiens
EAW98477	100.0	transmembrane p...	Homo sapiens
AAI13367	100.0	TMEM132B protei...	Homo sapiens
AAI31622	99.8	TMEM132B protei...	Homo sapiens
BAC04053	99.7	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB075824	1.9e-75	52.7	KIAA1944

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

[ zoom out (x2) ]

Result of InterProScan

Search method interpro_ID From To Entry Definition

None - - - - -

Search method	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

SOSUI2 1 413 EIGMYALLCVFCLAILVFLINCV 435 PRIMARY 23

Method	No.	N terminal	transmembrane region	C terminal	type	length
SOSUI2	1	413	EIGMYALLCVFCLAILVFLINCV	435	PRIMARY	23

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: CTCAGAATACTCCATGTGTCC

Primer_r
: AGTCTACAGATGTGGCAATGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 12

Experimental conditions

Panel name	: genbank
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	4331 bp
Genome contig ID	gi89161190f_124594608
PolyA signal sequence (AATAAA,-19)	+--------+--------+----*----+---- TCGTTTTTAACATGAAAATAAACATTTAAACATTC
Flanking genome sequence (114936 - 114985)	----+--------+--------+--------+--------+----* TTCAGTTGTTTCATTATTTTATCTGCATGTTCCATAAAGCAGCTGTATGG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	12	f	124694608	124709542	4	99.1	Perfect prediction

Primer_f	: CTCAGAATACTCCATGTGTCC
Primer_r	: AGTCTACAGATGTGGCAATGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1906

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information