HUGE

Gene/Protein Characteristic Table for KIAA1726

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK07402
Accession No. :	AB051513
Description :	zinc finger CCCH-type containing 12C.
HUGO Gene Name :	zinc finger CCCH-type containing 12C (ZC3H12C)
Clone Name :	pf01109 [Vector Info]
Flexi ORF Clone :	pF1KA1726
Source :	Human brain (hippocampus)

Features of the cloned DNA sequence	Description

Length: 7981 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 6105 bp

Genome contig ID gi51511727f_109428857
PolyA signal sequence
(ATTAAA,-26)
+----*----+----*----+----*----+----
AAAATTGAAATTAAATGTCAAAGACAACTAGACAT
Flanking genome sequence
(118919 - 118968)
----+----*----+----*----+----*----+----*----+----*
AACTTAAGGCATGATGAGAGTGTTTTTTTTTCCTGAACCCGTCATTATAG

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 11 f 109528857 109547774 4 99.1 Perfect prediction

Features of the protein sequence	Description

Length: 624 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
Q9C0D7	100.0	Zinc finger CCC...	Homo sapiens
BAG61159	100.0	unnamed protein...	Homo sapiens
BAG10484	100.0	zinc finger CCC...	synthetic construct
XP_522175	99.8	zinc finger CCC...	Pan troglodytes
BAG58377	99.8	unnamed protein...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output, Multiple alignment)

Entry	Exp	ID%	HUGE_ID
AB002321	1e-16	46.6	KIAA0323
AB014515	7.6e-15	50.7	KIAA0615
AB037726	2.7e-12	46.9	KIAA1305

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: TTCCTTGCCCGATAACTCCAC

Primer_r
: ACAATTCTCACAAGGTCAGGG

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 11

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	6105 bp
Genome contig ID	gi51511727f_109428857
PolyA signal sequence (ATTAAA,-26)	+--------+--------+----*----+---- AAAATTGAAATTAAATGTCAAAGACAACTAGACAT
Flanking genome sequence (118919 - 118968)	----+--------+--------+--------+--------+----* AACTTAAGGCATGATGAGAGTGTTTTTTTTTCCTGAACCCGTCATTATAG

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	11	f	109528857	109547774	4	99.1	Perfect prediction

Primer_f	: TTCCTTGCCCGATAACTCCAC
Primer_r	: ACAATTCTCACAAGGTCAGGG
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1726

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information