HUGE

Gene/Protein Characteristic Table for KIAA1381

Link to : Rouge \| GTOP \| SWISS-PROT/TrEMBL \| GeneCards\| RefDIC
Features : DNA sequence \| Protein sequence \| Expression \| Mapping

Product ID :	ORK04599
Accession No. :	AB037802
Description :	Conserved oligomeric Golgi complex component 1.
HUGO Gene Name :	component of oligomeric golgi complex 1 (COG1)
Clone Name :	fj05335 [Vector Info]
Flexi ORF Clone :	pF1KA1381
Source :	Human fetal brain

Features of the cloned DNA sequence	Description

Length: 4052 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis) for :
cloned DNA seq.
Warning for N-terminal truncation:
YES

Warning for coding interruption:
NO

Integrity of 3' end

Length of 3'UTR 1165 bp

Genome contig ID gi51511734f_68600806
PolyA signal sequence
(AATAAA,-27)
+----*----+----*----+----*----+----
TCTCCCTAAATAAATACTACCACATTATTTCTTCT
Flanking genome sequence
(115434 - 115483)
----+----*----+----*----+----*----+----*----+----*
AAAGGTGCCTCTGCTCATCTGATTCTCAGCCACACCAATCTTTCCAGTTT

Ensembl ContigView (Add our DAS server as a DAS source)

Chr f/r start end exon identity class

ContigView(URL based/DAS) 17 f 68700806 68716238 13 99.6 Perfect prediction

Features of the protein sequence	Description

Length: 961 aa

Result of homology search against nr database (FASTA output, Multiple alignment)

Entry	ID%	Protein	Source
EAW89113	99.9	component of ol...	Homo sapiens
XP_001086484	98.2	similar to comp...	Macaca mulatta
BAG72502	100.0	component of ol...	synthetic construct
Q8WTW3	99.9	Conserved oligo...	Homo sapiens
AAH47465	99.4	COG1 protein [H...	Homo sapiens

The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.

Result of homology search against other HUGE database (FASTA output)
No significant homologues

Result of motif / domain search (InterProScan and SOSUI)

Motif_DB interpro_ID From To Entry Definition

None - - - - -

Motif_DB	interpro_ID	From	To	Entry	Definition
None	-	-	-	-	-

Prediction of transmembrane (TM) segments

Method No. N terminal transmembrane region C terminal type length

- - - - - - -

Method	No.	N terminal	transmembrane region	C terminal	type	length
-	-	-	-	-	-	-

Expression profile	Description

: RT-PCR-ELISA Description
: Experimental conditions

Primer_f
: GTGTATCCTTTCCGTATTCCC

Primer_r
: TGTGGGCAGAACTGAAAGATC

PCR conditions
: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RT-PCR-ELISA	Description

RH mapping information	Description

Chromosome No.

: 17

Experimental conditions

Panel name	: unigene
Primer_f	: -
Primer_r	: -
PCR product length	: -
PCR conditions	: -

How to obtain KIAA clone(s) Back to the HUGE Protein Database homepage

	cloned DNA seq.
Warning for N-terminal truncation:	YES
Warning for coding interruption:	NO

Length of 3'UTR	1165 bp
Genome contig ID	gi51511734f_68600806
PolyA signal sequence (AATAAA,-27)	+--------+--------+----*----+---- TCTCCCTAAATAAATACTACCACATTATTTCTTCT
Flanking genome sequence (115434 - 115483)	----+--------+--------+--------+--------+----* AAAGGTGCCTCTGCTCATCTGATTCTCAGCCACACCAATCTTTCCAGTTT

	Chr	f/r	start	end	exon	identity	class
ContigView(URL based/DAS)	17	f	68700806	68716238	13	99.6	Perfect prediction

Primer_f	: GTGTATCCTTTCCGTATTCCC
Primer_r	: TGTGGGCAGAACTGAAAGATC
PCR conditions	: 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

Gene/Protein Characteristic Table for KIAA1381

Features of the cloned DNA sequence

Features of the protein sequence

Expression profile

RH mapping information