Gene/Protein Characteristic Table for KIAA1008
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK01142
Accession No AB023225
Description DIS3 homolog, exosome endoribonuclease and 3'-5' exoribonuclease, transcript variant 2
Clone name hh04776s1
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5231 bp)
Predicted protein sequence (935 aa)
Flexi ORF Clone FXC01142
Source Human adult brain
Rouge ID mKIAA1008 by Kazusa Mouse cDNA Project
Note We replaced hh04776, former representative clones for KIAA1008 with hh04776s1. (2002/5/10)
Features of the cloned cDNA sequence
Description

Length: 5231 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 2351 bp
Genome contig ID gi51511729r_72129866
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
GTTCAGCCTGGATGATGAGAGTGAGACTCCATCGC
Flanking genome sequence
(99716 - 99667)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAGAAAAGAAAATTAGCCAGGTGTGGTGGCAAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 13 r 72229582 72254064 21 99.5 Perfect prediction
Features of the protein sequence
Description

Length: 935 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
BAG11273 0 100.0 exosome complex...
synthetic construct
AAH56143 0 95.0 DIS3 mitotic co...
Homo sapiens
BAF92610 0 94.9 DIS3 [Homo sapi...
Homo sapiens
CAH56266 0 94.7 hypothetical pr...
Homo sapiens
XP_001495267 0 90.1 DIS3 mitotic co...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB075835 1.5e-48 37.2 KIAA1955
AB051556 1.4e-12 24.0 KIAA1769
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001900 444 774 PF00773 Ribonuclease II and R
ScanRegExp IPR001900 741 765 PS01175 Ribonuclease II and R
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CTTCCCTTGCTAATCACAGAG
Primer_r TGGAACCTGGCACAACGTAAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 13
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp