Gene/Protein Characteristic Table for KIAA1955
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Product ID ORK04777
Accession No AB075835
Description DIS3 like exosome 3'-5' exoribonuclease
Clone name fk07007
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (3260 bp)
Predicted protein sequence (947 aa)
Source Human fetal brain
Rouge ID mKIAA1955 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 3260 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 416 bp
Genome contig ID gi51511731f_64274489
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
ATTCCAGCCTGGGCAACAGAGCGAGACTCCATCTC
Flanking genome sequence
(138633 - 138682)
----+----*----+----*----+----*----+----*----+----*
AAAAAAAAAAAAAAAAAAAAAAAAAGTTCTCTCATTCATTAAAGTTGCAT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 15 f 64374489 64413120 16 99.7 Perfect prediction
Features of the protein sequence
Description

Length: 947 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
AAH22089 0 99.9 DIS3 mitotic co...
Homo sapiens
Q8TF46 0 99.9 DIS3-like exonu...
Homo sapiens
XP_001174664 0 99.6 hypothetical pr...
Pan troglodytes
XP_001174660 0 99.6 hypothetical pr...
Pan troglodytes
XP_001174669 0 99.6 hypothetical pr...
Pan troglodytes
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB023225 4.6e-52 36.8 KIAA1008
AB051556 2.8e-20 24.7 KIAA1769
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001900 358 710 PF00773 Ribonuclease II and R
ScanRegExp IPR001900 677 701 PS01175 Ribonuclease II and R
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CCTTAAATAATGGCAACCTGG
Primer_r CAGTTCCCACATGATGCTTAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 15
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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