Gene/Protein Characteristic Table for KIAA1978
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Product ID ORK05739
Accession No AB075858
Description ribonucleoprotein, PTB-binding 1
Clone name fj03313
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4694 bp)
Predicted protein sequence (384 aa)
Source Human fetal brain
Rouge ID mKIAA1978 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4694 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning Warning
Integrity of 3' end
Length of 3'UTR 3365 bp
Genome contig ID gi42406306r_10187891
PolyA signal sequence
(ATTAAA,-30)
+----*----+----*----+----*----+----
GCTGAATTAAAGTTTGTAAGTAAATGGTTTTAAAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAATCAGAGTTGGCTGGTTCTTGGGACAAACAGTGGGCTTGAGTGGGAGG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 19 r 10287891 10305187 10 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 384 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q8IY67 4.1e-109 81.3 Ribonucleoprote...
Homo sapiens
NP_597709 4.8e-109 89.4 RAVER1 [Homo sa...
Homo sapiens
EAW84094 5.5e-109 89.4 hCG2033729, iso...
Homo sapiens
XP_001105380 1.8e-107 88.3 similar to Rave...
Macaca mulatta
AAI23486 9.8e-105 81.4 RAVER1 protein ...
Bos taurus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB046799 1e-46 49.9 KIAA1579
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000504 55 126 PF00076 RNA recognition motif
IPR000504 178 215 PF00076 RNA recognition motif
HMMSmart IPR000504 54 127 SM00360 RNA recognition motif
IPR000504 143 216 SM00360 RNA recognition motif
ProfileScan IPR000504 53 131 PS50102 RNA recognition motif
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CCTCATTATGTCTCTGGCTTG
Primer_r CTCGAAAGGCCAAAATTACAG
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 19
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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