# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/fj03313.fasta.huge -Q ../query/KIAA1978.ptfa ./tmplib.25089 2
FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007
Please cite:
 W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448

 KIAA1978, 384 aa
 vs ./tmplib.25089 library

1987121 residues in  2037 sequences
  Expectation_n fit: rho(ln(x))= 6.5889+/-0.0061; mu= 6.1528+/- 0.414
 mean_var=147.0603+/-34.631, 0's: 0 Z-trim: 3  B-trim: 0 in 0/40
 Lambda= 0.105761

FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2
 join: 37, opt: 25, open/ext: -10/-2, width:  16
The best scores are:                                      opt bits E(2037)
KIAA1579  ( 704 res)   fj04678                     ( 704) 1117 181.8   1e-46


>>KIAA1579  ( 704 res)   fj04678                          (704 aa)
 initn: 1100 init1: 1032 opt: 1117  Z-score: 930.4  bits: 181.8 E(): 1e-46
Smith-Waterman score: 1117;  49.864% identity (73.171% similar) in 369 aa overlap (17-382:132-489)

                             10        20        30        40      
KIAA19               PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV
                                     :::::::::::. ::. :::  .: ..: :
KIAA15 LPQDSNCQEVHDLLKDYDLKYCYVDRNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIV
             110       120       130       140       150       160 

         50        60        70        80        90       100      
KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS
       ::::::::::..:.: :.:...:::::: .:..::::::::: ::.::::::.:::::: 
KIAA15 QLQPTDALLCITNVPISFTSEEFEELVRAYGNIERCFLVYSEVTGHSKGYGFVEYMKKDF
             170       180       190       200       210       220 

        110       120       130       140       150       160      
KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV
       ::.:. .:::. ::  .:...: :.. :.  :.::.:::.:.::  . : . : . .:.:
KIAA15 AAKARLELLGRQLGASALFAQWMDVNLLASELIHSKCLCIDKLPSDYRDSEELLQIFSSV
             230       240       250       260       270       280 

        170       180       190       200       210       220      
KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS
       :.:.:::::  . . . ::::.:: :::.:::.:: :::... ::...::::::: ::::
KIAA15 HKPVFCQLAQDEGSYVGGFAVVEYSTAEQAEEVQQAADGMTIKGSKVQVSFCAPGAPGRS
             290       300       310       320       330       340 

        230       240       250       260       270       280      
KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP
        :::::::: .  .  :::::::: .:....:.  : ::.::.: : : :  : ..::.:
KIAA15 TLAALIAAQRVMHSNQKGLLPEPNPVQIMKSLNNPAMLQVLLQPQLCGRAV-KPAVLGTP
             350       360       370       380       390        400

        290       300       310       320       330         340    
KIAA19 PAMPLLNGPALSTALLQLALQTQGQKVTHASPSPTALQPLQALFN--TAGAIGGVGGPLA
        ..: : .:..: :.:.:  .   :...:    : : : :. . :  : .  : .: : :
KIAA15 HSLPHLMNPSISPAFLHL--NKAHQNLSHI---PLAQQQLMKFENIHTNNKPGLLGEPPA
              410         420          430       440       450     

          350        360       370       380                       
KIAA19 VPWGRRTRVRATPP-NPCLSHPHPHPPLAIAHDGSPSFPPF                   
       :       . .. : .  :.: : .     ::  :  .:                     
KIAA15 VVLQTALGIGSVLPLKKELGHHHGE-----AHKTSSLIPTQTTITAGMGMLPFFPNQHIA
         460       470       480            490       500       510

KIAA15 GQAGPGHSNTQEKQPATVGMAEGNFSGSQPYLQSFPNLAAGSLLVGHHKQQQSQPKGTEI
              520       530       540       550       560       570




384 residues in 1 query   sequences
1987121 residues in 2037 library sequences
 Scomplib [34.26]
 start: Thu Dec 18 15:24:16 2008 done: Thu Dec 18 15:24:16 2008
 Total Scan time:  0.380 Total Display time:  0.020

Function used was FASTA [version 34.26.5 April 26, 2007]