hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18112242/chunk_1/iprscan-20080502-18112242.nocrc
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: KIAA1978
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     95.3    5.9e-26   3
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     77.0    5.5e-20   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   2/3      55   126 ..     1    74 []    58.8    1e-15
PF00076.12.ls   1/2      55   126 ..     1    74 []    60.7  4.3e-15
PF00076.12.fs   3/3     178   215 ..    37    74 .]    25.8  1.8e-06

Alignments of top-scoring domains:
PF00076.12.fs: domain 2 of 3, from 55 to 126: score 58.8, E = 1e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V NLpp++t+++ ++l ++fG+ e++ +v+     tg+skG++F 
    KIAA1978    55    LCVANLPPSLTQQQFEELVRPFGSLERCFLVYS--ERTGQSKGYGFA 99   

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+ ++++A++A++ l Gk lg r+l+v   
    KIAA1978   100 EYMKKDSAARAKSDLLGKPLGPRTLYV    126  

PF00076.12.ls: domain 1 of 2, from 55 to 126: score 60.7, E = 4.3e-15
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrDttretgrskGfaFV
                      l V NLpp++t+++ ++l ++fG+ e++ +v+     tg+skG++F 
    KIAA1978    55    LCVANLPPSLTQQQFEELVRPFGSLERCFLVYS--ERTGQSKGYGFA 99   

                   eFedeedAekAldalnGkelggrelrv<-*
                   e+ ++++A++A++ l Gk lg r+l+v   
    KIAA1978   100 EYMKKDSAARAKSDLLGKPLGPRTLYV    126  

PF00076.12.fs: domain 3 of 3, from 178 to 215: score 25.8, E = 1.8e-06
                   *->etgrskGfaFVeFedeedAekAldalnGkelggrelrv<-*
                      + g+ kGfa  e+e+ e Ae+A ++ +G  lgg  lrv   
    KIAA1978   178    QDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRV    215  

//