# /hgtech/tools/fasta-34.26.5_v890/fasta34_t -T 8 -b50 -d10 -E0.01 -H -O./tmp/fj03313.fasta.nr -Q ../query/KIAA1978.ptfa /cdna2/lib/nr/nr 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1978, 384 aa vs /cdna2/lib/nr/nr library 2693465022 residues in 7827732 sequences statistics sampled from 60000 to 7821318 sequences Expectation_n fit: rho(ln(x))= 5.7932+/-0.00019; mu= 8.7036+/- 0.011 mean_var=88.4377+/-17.232, 0's: 41 Z-trim: 70 B-trim: 127 in 1/64 Lambda= 0.136382 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 37, opt: 25, open/ext: -10/-2, width: 16 The best scores are: opt bits E(7827732) gi|74759693|sp|Q8IY67.1|RAVR1_HUMAN RecName: Full= ( 606) 1988 400.8 4.1e-109 gi|123173757|ref|NP_597709.2| RAVER1 [Homo sapiens ( 756) 1988 400.9 4.8e-109 gi|119604500|gb|EAW84094.1| hCG2033729, isoform CR ( 884) 1988 400.9 5.5e-109 gi|109123419|ref|XP_001105380.1| PREDICTED: simila ( 720) 1961 395.5 1.8e-107 gi|133777512|gb|AAI23486.1| RAVER1 protein [Bos ta ( 716) 1915 386.5 9.8e-105 gi|73986949|ref|XP_533918.2| PREDICTED: similar to (1861) 1895 382.8 3.2e-103 gi|194213180|ref|XP_001492770.2| PREDICTED: ribonu ( 715) 1876 378.8 2e-102 gi|81910350|sp|Q5XI28.1|RAVR1_RAT RecName: Full=Ri ( 748) 1875 378.6 2.4e-102 gi|85701216|sp|Q9CW46.2|RAVR1_MOUSE RecName: Full= ( 748) 1859 375.5 2.1e-101 gi|12836469|dbj|BAB23670.1| unnamed protein produc ( 756) 1859 375.5 2.1e-101 gi|22902182|gb|AAH37565.1| RAVER1 protein [Homo sa ( 561) 1426 290.2 7.4e-76 gi|183986231|gb|AAI66376.1| LOC100158642 protein [ ( 701) 1407 286.5 1.2e-74 gi|47682299|gb|AAH70699.1| MGC83237 protein [Xenop ( 694) 1374 280.0 1.1e-72 gi|149020523|gb|EDL78328.1| RAVER1 homolog (human) ( 568) 1339 273.1 1.1e-70 gi|119626955|gb|EAX06550.1| hypothetical protein F ( 460) 1116 229.1 1.5e-57 gi|119626954|gb|EAX06549.1| hypothetical protein F ( 678) 1117 229.5 1.7e-57 gi|109008378|ref|XP_001090029.1| PREDICTED: simila ( 832) 1117 229.5 2e-57 gi|109475182|ref|XP_342872.3| PREDICTED: similar t ( 673) 1107 227.5 6.7e-57 gi|194665729|ref|XP_600332.4| PREDICTED: similar t ( 890) 1104 227.0 1.3e-56 gi|85702750|sp|Q7TPD6.1|RAVR2_MOUSE RecName: Full= ( 673) 1099 225.9 2e-56 gi|67466983|sp|Q9HCJ3.2|RAVR2_HUMAN RecName: Full= ( 691) 1093 224.7 4.6e-56 gi|114557192|ref|XP_524729.2| PREDICTED: ribonucle ( 943) 1093 224.8 5.9e-56 gi|123254035|emb|CAM21386.1| ribonucleoprotein, PT ( 459) 1088 223.6 6.6e-56 gi|148698928|gb|EDL30875.1| ribonucleoprotein, PTB ( 503) 1088 223.7 7.1e-56 gi|114108222|gb|AAI22908.1| Ribonucleoprotein, PTB ( 640) 1080 222.2 2.6e-55 gi|189520226|ref|XP_001338083.2| PREDICTED: simila ( 838) 1075 221.3 6.3e-55 gi|47220043|emb|CAG12191.1| unnamed protein produc ( 856) 1059 218.1 5.6e-54 gi|149020520|gb|EDL78325.1| RAVER1 homolog (human) ( 257) 1003 206.7 4.5e-51 gi|26333527|dbj|BAC30481.1| unnamed protein produc ( 270) 999 206.0 8.1e-51 gi|149044564|gb|EDL97823.1| similar to hypothetica ( 603) 1000 206.4 1.3e-50 gi|148698929|gb|EDL30876.1| ribonucleoprotein, PTB ( 554) 999 206.2 1.4e-50 gi|47222165|emb|CAG11591.1| unnamed protein produc ( 374) 930 192.5 1.3e-46 gi|210092351|gb|EEA40579.1| hypothetical protein B ( 361) 785 163.9 4.8e-38 gi|40850921|gb|AAH65303.1| RAVER2 protein [Homo sa ( 514) 763 159.7 1.3e-36 gi|63101998|gb|AAH95698.1| Ribonucleoprotein, PTB- ( 313) 758 158.6 1.7e-36 gi|210124982|gb|EEA72676.1| hypothetical protein B ( 358) 720 151.2 3.4e-34 gi|198426965|ref|XP_002120230.1| PREDICTED: simila ( 851) 582 124.3 1e-25 gi|156226124|gb|EDO46936.1| predicted protein [Nem ( 301) 488 105.5 1.6e-20 gi|149020522|gb|EDL78327.1| RAVER1 homolog (human) ( 77) 467 100.9 9.7e-20 gi|212506005|gb|EEB10336.1| raver1, putative [Pedi ( 695) 456 99.4 2.5e-18 gi|215510647|gb|EEC20100.1| raver1, putative [Ixod ( 548) 401 88.5 3.7e-15 gi|60469605|gb|EAL67594.1| SAP DNA-binding domain- (1009) 399 88.3 7.9e-15 gi|7023005|dbj|BAA91798.1| unnamed protein product ( 166) 336 75.4 1e-11 gi|194387696|dbj|BAG61261.1| unnamed protein produ ( 230) 325 73.3 6e-11 gi|221109226|ref|XP_002164882.1| PREDICTED: simila (1296) 282 65.4 8.2e-08 gi|159163374|pdb|1WI6|A Chain A, Solution Structur ( 88) 247 57.7 1.2e-06 gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=P ( 629) 254 59.6 2.1e-06 gi|198416925|ref|XP_002124386.1| PREDICTED: simila ( 511) 238 56.4 1.6e-05 gi|190347872|gb|EDK40224.2| hypothetical protein P ( 631) 224 53.7 0.00013 gi|158514312|sp|A5DM21.1|PABP_PICGU RecName: Full= ( 631) 224 53.7 0.00013 >>gi|74759693|sp|Q8IY67.1|RAVR1_HUMAN RecName: Full=Ribo (606 aa) initn: 1968 init1: 1968 opt: 1988 Z-score: 2115.2 bits: 400.8 E(): 4.1e-109 Smith-Waterman score: 1992; 81.313% identity (84.596% similar) in 396 aa overlap (17-380:96-489) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV :::::::::::::::::::::::::::::: gi|747 LPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV 70 80 90 100 110 120 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 130 140 150 160 170 180 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 190 200 210 220 230 240 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS 250 260 270 280 290 300 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|747 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP 310 320 330 340 350 360 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQK---VTHASP----SPTALQPLQALFNTAGAIGGV :::::::::::::::::::::::::: . :: .: : :: . :.. : ::. gi|747 PAMPLLNGPALSTALLQLALQTQGQKKPGILGDSPLGALQPGA-QPANPLLGELPAGGGL 370 380 390 400 410 420 340 350 360 370 KIAA19 --------GGP-------LAVPWGRRTRVRATPPNPCLSHPHPHP----------PLAIA : : :. : : . :: :. : : : ::. gi|747 PPELPPRRGKPPPLLPSVLGPAGGDREALGLGPPAAQLTPP-PAPVGLRGSGLRGPLSHF 430 440 450 460 470 480 380 KIAA19 HDGSPSFPPF ..:::. gi|747 YSGSPTSYFTSGLQAGLKQSHLSKAIGSSPLGSGEGLLGLSPGPNGHSHLLKVRAGGGDM 490 500 510 520 530 540 >>gi|123173757|ref|NP_597709.2| RAVER1 [Homo sapiens] (756 aa) initn: 1968 init1: 1968 opt: 1988 Z-score: 2113.9 bits: 400.9 E(): 4.8e-109 Smith-Waterman score: 1988; 89.398% identity (91.691% similar) in 349 aa overlap (17-358:113-454) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV :::::::::::::::::::::::::::::: gi|123 LPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV 90 100 110 120 130 140 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 150 160 170 180 190 200 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 210 220 230 240 250 260 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS 270 280 290 300 310 320 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|123 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP 330 340 350 360 370 380 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQK---VTHASP----SPTALQPLQALFNTAGAIGGV :::::::::::::::::::::::::: . :: .: : :: . :.. : ::. gi|123 PAMPLLNGPALSTALLQLALQTQGQKKPGILGDSPLGALQPGA-QPANPLLGELPAGGGL 390 400 410 420 430 440 340 350 360 370 380 KIAA19 GGPLAVPWGRRTRVRATPPNPCLSHPHPHPPLAIAHDGSPSFPPF : .: :: . :: gi|123 --PPELP-PRRGK---PPPLLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGLRGSGLRG 450 460 470 480 490 >>gi|119604500|gb|EAW84094.1| hCG2033729, isoform CRA_c (884 aa) initn: 1968 init1: 1968 opt: 1988 Z-score: 2112.9 bits: 400.9 E(): 5.5e-109 Smith-Waterman score: 1988; 89.398% identity (91.691% similar) in 349 aa overlap (17-358:241-582) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV :::::::::::::::::::::::::::::: gi|119 LPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSV 220 230 240 250 260 270 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS 280 290 300 310 320 330 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 340 350 360 370 380 390 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS 400 410 420 430 440 450 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|119 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP 460 470 480 490 500 510 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQK---VTHASP----SPTALQPLQALFNTAGAIGGV :::::::::::::::::::::::::: . :: .: : :: . :.. : ::. gi|119 PAMPLLNGPALSTALLQLALQTQGQKKPGILGDSPLGALQPGA-QPANPLLGELPAGGGL 520 530 540 550 560 340 350 360 370 380 KIAA19 GGPLAVPWGRRTRVRATPPNPCLSHPHPHPPLAIAHDGSPSFPPF : .: :: . :: gi|119 --PPELP-PRRGK---PPPLLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGLRGSGLRG 570 580 590 600 610 620 >>gi|109123419|ref|XP_001105380.1| PREDICTED: similar to (720 aa) initn: 1941 init1: 1941 opt: 1961 Z-score: 2085.5 bits: 395.5 E(): 1.8e-107 Smith-Waterman score: 1961; 88.252% identity (91.404% similar) in 349 aa overlap (17-358:77-418) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV ::::::::::::::::::::: :::::::: gi|109 GTGLWGHGGGRVEGQALGARLTSHCPLPTAAFVTLLNGEQAEAAINAFHQSCLRERELSV 50 60 70 80 90 100 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|109 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDS 110 120 130 140 150 160 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV 170 180 190 200 210 220 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS ::::::::::::::::::::::::::::::::::::::::.::::::::::::::::::: gi|109 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLALGGSHLRVSFCAPGPPGRS 230 240 250 260 270 280 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP :::::::::::::::::::::::::::::::::::::::::::::::::::::::::::: gi|109 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP 290 300 310 320 330 340 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQK---VTHASP----SPTALQPLQALFNTAGAIGGV ::::::.::::::::::::::::::: . :: .: : :: . :.. : ::. gi|109 PAMPLLSGPALSTALLQLALQTQGQKKPGILGDSPLGALQPGA-QPANPLLGELPAGGGL 350 360 370 380 390 400 340 350 360 370 380 KIAA19 GGPLAVPWGRRTRVRATPPNPCLSHPHPHPPLAIAHDGSPSFPPF : .: :: . :: gi|109 --PPELP-PRRGK---PPPLLPSVLGPAGGDREALGLGPPAAQLTPPPAPVGLRGSGLRG 410 420 430 440 450 >>gi|133777512|gb|AAI23486.1| RAVER1 protein [Bos taurus (716 aa) initn: 1915 init1: 1885 opt: 1915 Z-score: 2036.6 bits: 386.5 E(): 9.8e-105 Smith-Waterman score: 1915; 81.432% identity (87.798% similar) in 377 aa overlap (17-383:96-465) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV :::::::::::::::.:::::::::::::: gi|133 LPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAISAFHQSRLRERELSV 70 80 90 100 110 120 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::::::::::::::::::::::::::::::.:::::::::::::: gi|133 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDS 130 140 150 160 170 180 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::::::::.::::: :::::: gi|133 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFSDVDALRRALSAV 190 200 210 220 230 240 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS :.::::::: :::::::::::::::::::::::::.::::.::::::::::::::::::: gi|133 HTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLRVSFCAPGPPGRS 250 260 270 280 290 300 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|133 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGGAGGKQGLLGAP 310 320 330 340 350 360 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQK---VTHASP----SPTALQPLQALFNTAGAIGGV ::.::::::::::::::::::::.:: . :: .: : :: . :.. .: ::. gi|133 PAVPLLNGPALSTALLQLALQTQSQKKPGILGDSPLGTLQPGA-QPANPLLGELSAGGGL 370 380 390 400 410 420 340 350 360 370 380 KIAA19 GGPLAVPWGRRTRVRATPPN-PCLSHPH--PHPPLAIAHDGSPSFPPF : .: :: . :: : : : . :.... . :: gi|133 --PPELP-PRRGK---PPPLLPPLLGPSGGDREPMGLGPPAPQLTPPPAPVGLRGAGLRG 430 440 450 460 470 gi|133 LQKDSGPLPTPPGVSLLGEPPKDFRIPLNPYLNLHSLLPASNLAAPGGGGGGGGSSKAFQ 480 490 500 510 520 530 >>gi|73986949|ref|XP_533918.2| PREDICTED: similar to Non (1861 aa) initn: 1905 init1: 1875 opt: 1895 Z-score: 2009.4 bits: 382.8 E(): 3.2e-103 Smith-Waterman score: 1895; 83.978% identity (89.227% similar) in 362 aa overlap (17-371:1216-1562) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV :::::::::::::::.:::::::::::::: gi|739 RPEKCPYEEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAIGAFHQSRLRERELSV 1190 1200 1210 1220 1230 1240 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::.:::::::::::::::::::::::::::.:::::::::::::: gi|739 QLQPTDALLCVANLPPSFTQQQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDS 1250 1260 1270 1280 1290 1300 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV ::::::::::::::::::::::::::::::.::::::::::.:::::.::::: :::::: gi|739 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPVLLHSRCLCVDHLPPGFSDVDALRRALSAV 1310 1320 1330 1340 1350 1360 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS :.::::::: :::::::::::::::::::::::::.::::.::::::::::::::::::: gi|739 HTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLRVSFCAPGPPGRS 1370 1380 1390 1400 1410 1420 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP ::::::::::::::::::::::::::::::::::::::::::::::::.::::::::::: gi|739 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGNAGGKQGLLGAP 1430 1440 1450 1460 1470 1480 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQK---VTHASP----SPTALQPLQALFNTAGAIGGV :::::::::::::::::::::::.:: . :: .: : :: . :.. .: ::. gi|739 PAMPLLNGPALSTALLQLALQTQSQKKPGILGDSPLGTLQPGA-QPANPLLGELSA-GGA 1490 1500 1510 1520 1530 1540 340 350 360 370 380 KIAA19 GGPLAVPWGRRTRVRATPPNPCLSHPHPHPPLAIAHDGSPSFPPF : : :: . :: : : ::: gi|739 LPPELPP--RRGK----PP-PLL------PPLLGPSGGDREAIGLGPPAAQLTPPPAPVG 1550 1560 1570 1580 1590 gi|739 LRGTGLRSLQKDSGPLPAPSGVSLLGEPPKDFRIPLNPYLNLHSLLPASNLAGKEARGWG 1600 1610 1620 1630 1640 1650 >>gi|194213180|ref|XP_001492770.2| PREDICTED: ribonucleo (715 aa) initn: 1874 init1: 1723 opt: 1876 Z-score: 1995.1 bits: 378.8 E(): 2e-102 Smith-Waterman score: 1876; 83.102% identity (88.920% similar) in 361 aa overlap (17-371:96-441) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV :::::::::::::::.::::::: :::::: gi|194 LPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAISAFHQSRL-ERELSV 70 80 90 100 110 120 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS .::::::::::::::::::::::::::::::::::::::::::.:.:::::::::::::: gi|194 RLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERSGHSKGYGFAEYMKKDS 130 140 150 160 170 180 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::::::::.::::: :::::: gi|194 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFSDVDALRRALSAV 190 200 210 220 230 240 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS :.::::::: :::::::::::::::::::::::::.::::.::::::::::::::::::: gi|194 HTPTFCQLAYGQDGQLKGFAVLEYETAEMAEEAQQRADGLALGGSHLRVSFCAPGPPGRS 250 260 270 280 290 300 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP :::::::::::::::::::::::..:::::::::::::::::::::::.::::::::::: gi|194 MLAALIAAQATALNRGKGLLPEPSLLQLLNNLGPSASLQLLLNPLLHGGAGGKQGLLGAP 310 320 330 340 350 360 290 300 310 320 330 340 KIAA19 PAMPLLNGPALSTALLQLALQTQGQK---VTHASPS---PTALQPLQALFNTAGAIGGVG ::::::.:::::::::::::::: :: . :: : . :: . :.. .: ::. gi|194 PAMPLLSGPALSTALLQLALQTQTQKKPGILGDSPLGALPPGAQPANPLLGELSAGGGL- 370 380 390 400 410 420 350 360 370 380 KIAA19 GPLAVPWGRRTRVRATPPNPCLSHPHPHPPLAIAHDGSPSFPPF : .: :: . :: : : ::: gi|194 -PPELP-PRRGK----PP-PLL------PPLLGPSGGDREAMGLGPPAAQLTPPPAPGGL 430 440 450 460 470 gi|194 RGAGLRGLQKDSGPLPTPPGVSLLGEPPKDFRIPLNPYLNLHSLLPASNLAAPGGGGGGG 480 490 500 510 520 530 >>gi|81910350|sp|Q5XI28.1|RAVR1_RAT RecName: Full=Ribonu (748 aa) initn: 1901 init1: 1853 opt: 1875 Z-score: 1993.8 bits: 378.6 E(): 2.4e-102 Smith-Waterman score: 1879; 79.045% identity (87.798% similar) in 377 aa overlap (17-383:96-471) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV ::::::::::::::::.::::::::::::: gi|819 LPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSV 70 80 90 100 110 120 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::::: ::::::::::::::::::::::::.:::::::::::::: gi|819 QLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDS 130 140 150 160 170 180 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::.::::::::::: .::::: gi|819 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDHLPPGFNDVDALRQALSAV 190 200 210 220 230 240 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS ..::::::: ::::::::::::::::::::: :::.::::.::::::::::::::::::: gi|819 YTPTFCQLASGQDGQLKGFAVLEYETAEMAEAAQQRADGLALGGSHLRVSFCAPGPPGRS 250 260 270 280 290 300 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP ::::::::::::::::::::::::::::::::::::::::::::::::.:.::::::::: gi|819 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGGASGKQGLLGAP 310 320 330 340 350 360 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQKVTHASPSP-----TALQPLQALFNTAGAIGG--- ::::::.::::::::::::::.:.:. .... .: . : ::: . .... : gi|819 PAMPLLSGPALSTALLQLALQSQNQSQSQSQKKPGILGDSPLGTLQAGAQPSNSLLGELS 370 380 390 400 410 420 340 350 360 370 380 KIAA19 VGGPLAVPWGRRTRVRATPPNPCLSHPH--PHPPLAIAHDGSPSFPPF .:: :: : : . : : : : . :.... .: :: gi|819 AGGGLA-PELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPASQLTPPPAPMGLRGSSLRG 430 440 450 460 470 480 gi|819 LPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKETRGWGGSGRGRRP 490 500 510 520 530 540 >>gi|85701216|sp|Q9CW46.2|RAVR1_MOUSE RecName: Full=Ribo (748 aa) initn: 1891 init1: 1837 opt: 1859 Z-score: 1976.8 bits: 375.5 E(): 2.1e-101 Smith-Waterman score: 1860; 77.719% identity (87.533% similar) in 377 aa overlap (17-383:96-471) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV ::::::::::::::::.::::::::::::: gi|857 LPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSV 70 80 90 100 110 120 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::::: ::::::::::::::::::::::::.:::::::::::::: gi|857 QLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDS 130 140 150 160 170 180 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::.:::::.::::: ::::.: gi|857 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDHLPPGFSDVDALRRALSVV 190 200 210 220 230 240 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS ..::::::::::::::::::::::::::::: ::..::: .:: :::::::::::::::: gi|857 YTPTFCQLACGQDGQLKGFAVLEYETAEMAEAAQERADGQALGDSHLRVSFCAPGPPGRS 250 260 270 280 290 300 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP ::::::::::::::::::::::::.:::::::::::::::::::::::.:.::::::::: gi|857 MLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPLLHGGASGKQGLLGAP 310 320 330 340 350 360 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQKVTHASPSP-----TALQPLQALFNTAGAIGG--- ::::::.::::::::::::::.:.:. .... .: . : ::: . .... : gi|857 PAMPLLSGPALSTALLQLALQSQSQNQSQGQKKPGILGDSPLGTLQAGAQPSNSLLGELS 370 380 390 400 410 420 340 350 360 370 380 KIAA19 VGGPLAVPWGRRTRVRATPPNPCLSHPH--PHPPLAIAHDGSPSFPPF .:: :: : : . : : : : . :.... .. :: gi|857 AGGGLA-PELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPPPAPVGLRGSNHRG 430 440 450 460 470 480 gi|857 LPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKETRGWGGSGRGRRP 490 500 510 520 530 540 >>gi|12836469|dbj|BAB23670.1| unnamed protein product [M (756 aa) initn: 1891 init1: 1837 opt: 1859 Z-score: 1976.7 bits: 375.5 E(): 2.1e-101 Smith-Waterman score: 1860; 77.719% identity (87.533% similar) in 377 aa overlap (17-383:104-479) 10 20 30 40 KIAA19 PPQDTDPGPPGGRDQPAFVTLLNGEQAEAAINAFHQSRLRERELSV ::::::::::::::::.::::::::::::: gi|128 LPGDVTNQEVHDLLSDYELKYCFVDKYKGTAFVTLLNGEQAEAAINTFHQSRLRERELSV 80 90 100 110 120 130 50 60 70 80 90 100 KIAA19 QLQPTDALLCVANLPPSLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDS :::::::::::::::::::: ::::::::::::::::::::::::.:::::::::::::: gi|128 QLQPTDALLCVANLPPSLTQAQFEELVRPFGSLERCFLVYSERTGHSKGYGFAEYMKKDS 140 150 160 170 180 190 110 120 130 140 150 160 KIAA19 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDRLPPGFNDVDALCRALSAV :::::::::::::::::::::::::::::::::::::::::.:::::.::::: ::::.: gi|128 AARAKSDLLGKPLGPRTLYVHWTDAGQLTPALLHSRCLCVDHLPPGFSDVDALRRALSVV 200 210 220 230 240 250 170 180 190 200 210 220 KIAA19 HSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRS ..::::::::::::::::::::::::::::: ::..::: .:: :::::::::::::::: gi|128 YTPTFCQLACGQDGQLKGFAVLEYETAEMAEAAQERADGQALGDSHLRVSFCAPGPPGRS 260 270 280 290 300 310 230 240 250 260 270 280 KIAA19 MLAALIAAQATALNRGKGLLPEPNILQLLNNLGPSASLQLLLNPLLHGSAGGKQGLLGAP ::::::::::::::::::::::::.:::::::::::::::::::::::.:.::::::::: gi|128 MLAALIAAQATALNRGKGLLPEPNLLQLLNNLGPSASLQLLLNPLLHGGASGKQGLLGAP 320 330 340 350 360 370 290 300 310 320 330 KIAA19 PAMPLLNGPALSTALLQLALQTQGQKVTHASPSP-----TALQPLQALFNTAGAIGG--- ::::::.::::::::::::::.:.:. .... .: . : ::: . .... : gi|128 PAMPLLSGPALSTALLQLALQSQSQNQSQGQKKPGILGDSPLGTLQAGAQPSNSLLGELS 380 390 400 410 420 430 340 350 360 370 380 KIAA19 VGGPLAVPWGRRTRVRATPPNPCLSHPH--PHPPLAIAHDGSPSFPPF .:: :: : : . : : : : . :.... .. :: gi|128 AGGGLA-PELPPRRGKPQPLLPPLLGPSGGDREPMGLGPPATQLTPPPAPVGLRGSNHRG 440 450 460 470 480 490 gi|128 LPKDSGPLPTPPGVSLLGEPPKDYRIPLNPYLNLHSLLPSSNLAGKETRGWGGSGRGRRP 500 510 520 530 540 550 384 residues in 1 query sequences 2693465022 residues in 7827732 library sequences Tcomplib [34.26] (8 proc) start: Fri Mar 6 07:14:47 2009 done: Fri Mar 6 07:19:45 2009 Total Scan time: 1502.240 Total Display time: 0.150 Function used was FASTA [version 34.26.5 April 26, 2007]