hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-18112242/chunk_1/iprscan-20080502-18112242.nocrc
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Query sequence: KIAA1978
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                 102.4    5.3e-26   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2      54   127 ..     1   121 []    65.1  8.6e-15
SM00360    2/2     143   216 ..     1   121 []    37.2  2.2e-06

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 54 to 127: score 65.1, E = 8.6e-15
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                       l V NL  pp+ t+++ +el               ++fG ++++ +
    KIAA1978    54    LLCVANL--PPSLTQQQFEELV--------------RPFGSLERCFL 84   

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   v+ +                      TG+skG++F e+  +++A++A   
    KIAA1978    85 VYSER---------------------TGQSKGYGFAEYMKKDSAARA--K 111  

                   ealnaskGkeledgGrptlglrVe<-*
                   + l    Gk+l  g r+   l+V    
    KIAA1978   112 SDLL---GKPL--GPRT---LYVH    127  

SM00360: domain 2 of 2, from 143 to 216: score 37.2, E = 2.2e-06
                   *->tlfVgNLndppdvte.edLrelFkevksvevfraeteskfGkvvsvr
                      +l V  L  pp  ++ + L ++               s     + ++
    KIAA1978   143    CLCVDRL--PPGFNDvDALCRAL--------------SAVHSPTFCQ 173  

                   ivrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAll
                   +    d                      G+ kGfa  e+e++e Ae A  
    KIAA1978   174 LACGQD----------------------GQLKGFAVLEYETAEMAEEA-- 199  

                   iealnaskGkeledgGrptlglrVe<-*
                   +++ +   G  l  gG +   lrV+   
    KIAA1978   200 QQQAD---GLSL--GGSH---LRVS    216  

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