Gene/Protein Characteristic Table for KIAA1964
Order Kazusa clone(s) from : Japan || Other countries
Product ID ORK06387
Accession No AB075844
Description phospholipase C, delta 3
Clone name ph00746
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5926 bp)
Predicted protein sequence (757 aa)
Source Human brain (hippocampus)
Rouge ID mKIAA1964 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5926 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 3651 bp
Genome contig ID gi51511734r_40441861
PolyA signal sequence
(None)
+----*----+----*----+----*----+----
TTCTTTATTAGAAACAAGTGAGATGTATTGAGCAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACAACAATGCATTTGGTATTTCCTCCCCGACCCTGGAAATGGATGCCCC

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 17 r 40541861 40565208 15 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 757 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q8N3E9 0 100.0 1-phosphatidyli...
Homo sapiens
CAD39054 0 99.9 hypothetical pr...
Homo sapiens
XP_001115230 0 98.3 similar to phos...
Macaca mulatta
XP_001142960 0 95.5 phospholipase C...
Pan troglodytes
XP_001917291 0 93.3 similar to 1-ph...
Equus caballus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB029015 3.8e-60 37.2 KIAA1092
AB007919 9.1e-42 35.6 KIAA0450
AB028992 3.7e-28 35.0 KIAA1069
AB040949 1.1e-20 30.5 KIAA1516
AB011153 5.2e-17 30.6 KIAA0581
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
BlastProDom IPR013841 316 600 PD001202 Phosphatidylinositol-specific phospholipase C
FPrintScan IPR001192 310 328 PR00390 Phosphoinositide-specific phospholipase C
IPR001192 336 356 PR00390 Phosphoinositide-specific phospholipase C
IPR001192 434 451 PR00390 Phosphoinositide-specific phospholipase C
IPR001192 550 571 PR00390 Phosphoinositide-specific phospholipase C
IPR001192 571 589 PR00390 Phosphoinositide-specific phospholipase C
IPR000008 648 660 PR00360 C2 calcium-dependent membrane targeting
IPR000008 678 691 PR00360 C2 calcium-dependent membrane targeting
IPR000008 700 708 PR00360 C2 calcium-dependent membrane targeting
IPR001192 721 731 PR00390 Phosphoinositide-specific phospholipase C
HMMPfam IPR015359 223 304 PF09279 EF-hand-like
IPR000909 306 451 PF00388 Phosphatidylinositol-specific phospholipase C
IPR001711 495 612 PF00387 Phosphatidylinositol-specific phospholipase C
IPR000008 630 720 PF00168 C2 calcium-dependent membrane targeting
HMMSmart IPR001849 33 142 SM00233 Pleckstrin-like
IPR000909 305 450 SM00148 Phosphatidylinositol-specific phospholipase C
IPR001711 496 612 SM00149 Phosphatidylinositol-specific phospholipase C
IPR000008 629 735 SM00239 C2 calcium-dependent membrane targeting
ProfileScan IPR000909 305 450 PS50007 Phosphatidylinositol-specific phospholipase C
IPR001711 496 612 PS50008 Phosphatidylinositol-specific phospholipase C
IPR000008 615 720 PS50004 C2 calcium-dependent membrane targeting
ScanRegExp IPR002048 199 211 PS00018 Calcium-binding EF-hand
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f CGGATGAACTCAGCCAACTAC
Primer_r AGGCAGGTTTTAGGACGTAGC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 17
Experimental conditions
Panel name genbank
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
Order Kazusa clone(s) from : Japan || Other countries
Back to the HUGE Protein Database homepage
Send a message to office AT kazusa.or.jp