hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17481408/chunk_1/iprscan-20080502-17481408.nocrc
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Query sequence: KIAA1964
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model     Description                                   Score    E-value  N 
--------  -----------                                   -----    ------- ---
SM00148                                                 282.0    4.5e-80   1
SM00149                                                 204.5    9.6e-57   1
SM00239                                                  69.2    5.2e-16   1
SM00233                                                  33.0    4.1e-05   1

Parsed for domains:
Model     Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------  ------- ----- -----    ----- -----      -----  -------
SM00233     1/1      33   142 ..     1    82 []    33.0  4.1e-05
SM00148     1/1     305   450 ..     1   182 []   282.0  4.5e-80
SM00149     1/1     496   612 ..     1   119 []   204.5  9.6e-57
SM00239     1/1     629   735 ..     1    92 []    69.2  5.2e-16

Alignments of top-scoring domains:
SM00233: domain 1 of 1, from 33 to 142: score 33.0, E = 4.1e-05
                   *->vikeGwLlkks.k.swkkryfvLfngvLlyyksk.....kpkgsipL
                      +++   L+k  +++  k+r  +L ++ L+ + +++ ++   ++++++
    KIAA1964    33    MLRGSRLRKIRsRtWHKERLYRLQEDGLSVWFQRripraPSQHIFFV 79   

                   sgc.svre.p................cFeivt.dr..tlllqAeseeere
                   ++++ vre++ +++ ++ ++   + +c++i +++r++ l l+A+++ee++
    KIAA1964    80 QHIeAVREgHqseglrrfggafaparCLTIAFkGRrkNLDLAAPTAEEAQ 129  

                   eWvealqsaiaka<-*
                   +Wv+ l ++ a++   
    KIAA1964   130 RWVRGLTKLRARL    142  

SM00148: domain 1 of 1, from 305 to 450: score 282.0, E = 4.5e-80
                   *->qDmdkPLshYfInsSHNsGtfkidiFPFGLDAPEKLRLPPYVTFLLR
                      qDm++PL+hYfI+sSHN                              
    KIAA1964   305    QDMNQPLAHYFISSSHN------------------------------ 321  

                   FTYLtgkQlwgessvegYiqaLkaGcRcvELDcwdgpdgePviyHGhTft
                    TYLt +Q++g+ss e+Y +a  +GcRcvELDcw gp gePviyHGhT+t
    KIAA1964   322 -TYLTDSQIGGPSSTEAYVRAFAQGCRCVELDCWEGPGGEPVIYHGHTLT 370  

                   skikLsdVleaIKkfAFvtSpyPEFvIlSLenHcspdqQakmaqmfkeiF
                   ski ++dV++a++++AF+ SpyP  vIlSLenHc+++qQa ma+++ +i+
    KIAA1964   371 SKILFRDVVQAVRDHAFTLSPYP--VILSLENHCGLEQQAAMARHLCTIL 418  

                   gdlLytkPlts.seeypgsnLPsPeqLkgKILLkgK<-*
                   gd+L+t  l+s++ e+    LPsPeqLkg+ L+kgK   
    KIAA1964   419 GDMLVTQALDSpNPEE----LPSPEQLKGRVLVKGK    450  

SM00149: domain 1 of 1, from 496 to 612: score 204.5, E = 9.6e-57
                   *->lseLvsycapvkFrsfelaeekdnafyemsSfsEtkaakkllekapt
                      ls+L +yc++   r ++ a +  +   ++sS+sE+k akkl ++a++
    KIAA1964   496    LSALAVYCHATRLRTLHPAPNA-PQPCQVSSLSERK-AKKLIREAGN 540  

                   dfvryNqrqLsRvYPkGtRvDSSNYnPqvfWnaGcQMVALNfQTpDkaMq
                   +fvr+N+rqL+RvYP G+R+ S NY+Pq++Wn GcQ+VALNfQTp+ +M+
    KIAA1964   541 SFVRHNARQLTRVYPLGLRMNSANYSPQEMWNSGCQLVALNFQTPGYEMD 590  

                   lNqGmFraNGgCGYVLKPefLR<-*
                   lN+G+F+ NG+CGYVLKP +LR   
    KIAA1964   591 LNAGRFLVNGQCGYVLKPACLR    612  

SM00239: domain 1 of 1, from 629 to 735: score 69.2, E = 5.2e-16
                   *->tLtvkiisArnLp...........DPYVkvs...........kTkvv
                      tL + ++ A++Lp+ +  ++++  DP V+++ ++ + +  ++ T  v
    KIAA1964   629    TLSIQVLTAQQLPklnaekphsivDPLVRIEihgvpadcarqETDYV 675  

                   kktlsgfNPvWnEesetFeFevpp...s.LeieVyDk......dfiGrvt
                    +++  fNP+W++   t++F +  ++ + +++ V D++ ++++df+G++t
    KIAA1964   676 LNNG--FNPRWGQ---TLQFQLRApelAlVRFVVEDYdatspnDFVGQFT 720  

                   ippnnahqhsadglihlsell.ggrh.kl<-*
                   +p              ls+l++g+rh +l   
    KIAA1964   721 LP--------------LSSLKqGYRHiHL    735  

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