hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21501946/chunk_1/iprscan-20080501-21501946.nocrc
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Query sequence: KIAA1259
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
SM00487                                                 138.5    7.1e-37   1
SM00490                                                  91.2    1.3e-22   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
SM00487      1/1     519   717 ..     1   219 []   138.5  7.1e-37
SM00490      1/1    1136  1219 ..     1    86 []    91.2  1.3e-22

Alignments of top-scoring domains:
SM00487: domain 1 of 1, from 519 to 717: score 138.5, E = 7.1e-37
                   *->gf.klrpyQkeaipwlleg....rdvilaapTGsGKTlafllpllel
                      +++kl +yQ+++++wl +  +++ ++ila+++G+GKT+ + ++ll +
    KIAA1259   519    FNgKLKGYQLKGMNWLANLyeqgINGILADEMGLGKTV-QSIALLAH 564  

                   lkkgkplaskkgkgprvLvlvPtreLaeQwaeelkklgpslgvyfvevlk
                   l ++ +       ++++L+++P  +  ++w++e+ ++ p+        +k
    KIAA1259   565 LAEREN------IWGPFLIISP-ASTLNNWHQEFTRFVPK--------FK 599  

                   vvglygG.sktkekeqlrklksgkt........dilvtTpgrLldll.ng
                   v+ + g++     ++ +r++ s+kt  +++ + ++++t+++ + ++++  
    KIAA1259   600 VLPYWGNpHD---RKVIRRFWSQKTlytqdapfHVVITSYQLVVQDVkY- 645  

                   kglsl.nldlvilDEaHrlldmgsggdhgfgdqle.llkrlpknrqrlll
                     +   ++++++lDEa+ l++       + +  ++ ll++  ++r+rlll
    KIAA1259   646 --FQRvKWQYMVLDEAQALKS-------SSSVRWKiLLQF--QCRNRLLL 684  

                   SATppeienllklflnlpelfpnpvfisvgf..tlepieqf<-*
                   ++Tp  i+n++++++       +++fi++   +++e++ ++   
    KIAA1259   685 TGTP--IQNTMAELWA------LLHFIMPTLfdSHEEFNEW    717  

SM00490: domain 1 of 1, from 1136 to 1219: score 91.2, E = 1.3e-22
                   *->delaelLkellkdpgikvarlHGglsqeeReeilekFrkgki..kvL
                      d l+e++  +    ++ ++rl+G+ + +eR++ +++F++ +   ++L
    KIAA1259  1136    DLLEEYMVYR----KHTYMRLDGSSKISERRDMVADFQNRNDifVFL 1178 

                   vaTdvaerGlDipgvdlVInydlpwspasyiQRiGRaGRaG<-*
                   ++T+++++G++++++d+VI+yd +w+p+ + Q+++Ra+R G   
    KIAA1259  1179 LSTRAGGLGINLTAADTVIFYDSDWNPTVDQQAMDRAHRLG    1219 

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