hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-21501946/chunk_1/iprscan-20080501-21501946.nocrc
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Query sequence: KIAA1259
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model      Description                                  Score    E-value  N 
--------   -----------                                  -----    ------- ---
PF00176.13.ls SNF2 family N-terminal domain                352.9   4.7e-103   1
PF00176.13.fs SNF2 family N-terminal domain                351.1   1.7e-102   1
PF00271.21.fs Helicase conserved C-terminal domain          92.1    2.7e-26   1
PF00271.21.ls Helicase conserved C-terminal domain          94.1    3.8e-25   1

Parsed for domains:
Model      Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
--------   ------- ----- -----    ----- -----      -----  -------
PF00176.13.fs   1/1     526   827 ..     1   355 []   351.1 1.7e-102
PF00176.13.ls   1/1     526   827 ..     1   355 []   352.9 4.7e-103
PF00271.21.fs   1/1    1141  1219 ..     1    76 []    92.1  2.7e-26
PF00271.21.ls   1/1    1141  1219 ..     1    76 []    94.1  3.8e-25

Alignments of top-scoring domains:
PF00176.13.fs: domain 1 of 1, from 526 to 827: score 351.1, E = 1.7e-102
                   *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay
                      YQl+G nWL++ly++        g++gILADEMGLGKT+Q+I+lla+
    KIAA1259   526    YQLKGMNWLANLYEQ--------GINGILADEMGLGKTVQSIALLAH 564  

                   lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns
                   l e  +++    gpfL++ P+Stl+nW  Ef +++p  +++++y g++ +
    KIAA1259   565 LAERENIW----GPFLIISPASTLNNWHQEFTRFVP-KFKVLPYWGNPHD 609  

                   rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin
                   r+ +r+    ++ l ++ +  f+v+itsY+++ +     d++ +    ++
    KIAA1259   610 RKVIRRFWS-QKTLYTQDA-PFHVVITSYQLVVQ-----DVKYFQR--VK 650  

                   wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl
                   w+y++lDE+   +K + S     k l ++  ++nRLlLTGTP+QN ++El
    KIAA1259   651 WQYMVLDEA-QALKSSSSVR--WKILLQFQ-CRNRLLLTGTPIQNTMAEL 696  

                   wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr
                   w+Ll+F+mP +F+s        ++F++wf+++i          +++    
    KIAA1259   697 WALLHFIMPTLFDSH-------EEFNEWFSKDIESHAE-----NKS---- 730  

                   ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels
                     +++     ++ rLh ilkpf+LRR+Kkdve+ L++  K+e+  +c+l+
    KIAA1259   731 -AIDEN----QLSRLHMILKPFMLRRIKKDVENELSD--KIEILMYCQLT 773  

                   klQkelYkkflke.eskdvkaindserreggkeknegksrllnlimqLrK
                   + Qk lY+ ++++ ++ d+ +   +     + +     s+l+nl mq+rK
    KIAA1259   774 SRQKLLYQALKNKiSIEDLLQSSMGS-TQQAQN---TTSSLMNLVMQFRK 819  

                   icNfHPyLf<-*
                   +cN HP Lf   
    KIAA1259   820 VCN-HPELF    827  

PF00176.13.ls: domain 1 of 1, from 526 to 827: score 352.9, E = 4.7e-103
                   *->YQleGvnWLislyknlvketdslglggILADEMGLGKTlQtIsllay
                      YQl+G nWL++ly++        g++gILADEMGLGKT+Q+I+lla+
    KIAA1259   526    YQLKGMNWLANLYEQ--------GINGILADEMGLGKTVQSIALLAH 564  

                   lkelkpktekrigpfLvVcPlStldnWlnEfekwapddlnivvyygdgns
                   l e  +++    gpfL++ P+Stl+nW  Ef +++p  +++++y g++ +
    KIAA1259   565 LAERENIW----GPFLIISPASTLNNWHQEFTRFVP-KFKVLPYWGNPHD 609  

                   rdqdrkdellrnvlkdggrlkfdvlitsYeiirkNkLlkdkdeLkklfin
                   r+ +r+    ++ l ++ +  f+v+itsY+++ +     d++ +    ++
    KIAA1259   610 RKVIRRFWS-QKTLYTQDA-PFHVVITSYQLVVQ-----DVKYFQR--VK 650  

                   wryvilDEGHHriKNedSklrkskalkklkhannRLlLTGTPlQNnLkEl
                   w+y++lDE+   +K + S     k l ++  ++nRLlLTGTP+QN ++El
    KIAA1259   651 WQYMVLDEA-QALKSSSSVR--WKILLQFQ-CRNRLLLTGTPIQNTMAEL 696  

                   wsLlnFlmPgiFgsleeyindgksFdkwfnnpiaeggdsavLadatefLr
                   w+Ll+F+mP +F+s        ++F++wf+++i          +++    
    KIAA1259   697 WALLHFIMPTLFDSH-------EEFNEWFSKDIESHAE-----NKS---- 730  

                   ykkeveeglklinrLhkilkpflLRRlKkdveksLpppeKteyvlfcels
                     +++     ++ rLh ilkpf+LRR+Kkdve+ L++  K+e+  +c+l+
    KIAA1259   731 -AIDEN----QLSRLHMILKPFMLRRIKKDVENELSD--KIEILMYCQLT 773  

                   klQkelYkkflke.eskdvkaindserreggkeknegksrllnlimqLrK
                   + Qk lY+ ++++ ++ d+ +   +     + +     s+l+nl mq+rK
    KIAA1259   774 SRQKLLYQALKNKiSIEDLLQSSMGS-TQQAQN---TTSSLMNLVMQFRK 819  

                   icNfHPyLf<-*
                   +cN HP Lf   
    KIAA1259   820 VCN-HPELF    827  

PF00271.21.fs: domain 1 of 1, from 1141 to 1219: score 92.1, E = 2.7e-26
                   *->ll.epgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG
                      ++ ++++ + rl+G+ + +eR++++++F+n +   ++L++T+++g+G
    KIAA1259  1141    YMvYRKHTYMRLDGSSKISERRDMVADFQNRNDifVFLLSTRAGGLG 1187 

                   iDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   i+++++++VI+yd++wnp+++ Q+++Ra+R G   
    KIAA1259  1188 INLTAADTVIFYDSDWNPTVDQQAMDRAHRLG    1219 

PF00271.21.ls: domain 1 of 1, from 1141 to 1219: score 94.1, E = 3.8e-25
                   *->ll.epgikvarlhGglsqeeReeilekFrngks..kvLvaTdvagrG
                      ++ ++++ + rl+G+ + +eR++++++F+n +   ++L++T+++g+G
    KIAA1259  1141    YMvYRKHTYMRLDGSSKISERRDMVADFQNRNDifVFLLSTRAGGLG 1187 

                   iDipdvnlVInydlpwnpesyiQRiGRaGRaG<-*
                   i+++++++VI+yd++wnp+++ Q+++Ra+R G   
    KIAA1259  1188 INLTAADTVIFYDSDWNPTVDQQAMDRAHRLG    1219 

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