Gene/Protein Characteristic Table for KIAA1097
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Product ID ORK01146
Accession No AB029020
Description ubiquitin specific peptidase 33, transcript variant 2
Clone name hk07058
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4271 bp)
Predicted protein sequence (980 aa)
Flexi ORF Clone FXC01146
Source Human adult brain
Rouge ID mKIAA1097 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4271 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 1326 bp
Genome contig ID gi89161185r_77834264
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TTAAAATTAGCTCAATAAAAATGTCTTTAAAATGT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AAAACTTGAATGTTGAATTTATTTGATAGATGTTAAAGGTAAAAGGTGCA

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 1 r 77934264 77998073 24 99.9 Perfect prediction
Features of the protein sequence
Description

Length: 980 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
XP_513509 0 98.3 ubiquitin speci...
Pan troglodytes
AAL78314 0 99.8 pVHL-interactin...
Homo sapiens
Q8TEY7 0 99.7 Ubiquitin carbo...
Homo sapiens
EAX06371 0 99.4 ubiquitin speci...
Homo sapiens
AAL78315 0 100.0 pVHL-interactin...
Homo sapiens
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB023220 7.3e-156 60.0 KIAA1003
D29956 9.3e-16 32.7 KIAA0055
AB011101 4.9e-14 23.9 KIAA0529
AB020698 4.1e-08 22.6 KIAA0891
AB028986 2e-07 30.4 KIAA1063
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR001607 99 173 PF02148 Zinc finger
IPR001394 220 750 PF00443 Peptidase C19
HMMSmart IPR001607 98 150 SM00290 Zinc finger
IPR006615 770 853 SM00695 Ubiquitin carboxyl-terminal hydrolase
IPR006615 878 962 SM00695 Ubiquitin carboxyl-terminal hydrolase
ProfileScan IPR001607 97 161 PS50271 Zinc finger
IPR001394 223 754 PS50235 Peptidase C19
ScanRegExp IPR001394 224 239 PS00972 Peptidase C19
IPR001394 695 712 PS00973 Peptidase C19
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TGTTGATAAAGCTGAGGCCAC
Primer_r AACATTGCTTTAGCTGGTGAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 1
Experimental conditions
Panel name GeneBridge 4
Primer_f TGTTGATAAAGCTGAGGCCAC
Primer_r AACATTGCTTTAGCTGGTGAC
PCR product length 223 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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