hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080501/iprscan-20080501-17181348/chunk_1/iprscan-20080501-17181348.nocrc
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Query sequence: KIAA1097
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00695                                                 195.0    7.1e-54   2
SM00290                                                  44.4    1.5e-08   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00290    1/1      98   150 ..     1    61 []    44.4  1.5e-08
SM00695    1/2     770   853 ..     1   114 []    67.3    2e-15
SM00695    2/2     878   962 ..     1   114 []   127.7  1.3e-33

Alignments of top-scoring domains:
SM00290: domain 1 of 1, from 98 to 150: score 44.4, E = 1.5e-08
                   *->rCsvEvCgtie.nGalWlCLi..CGqvgCGRyqeggdGgGnsHaleH
                      +C+  +C+ + +n  lW+CL+++C +vgCG++q        +H+  H
    KIAA1097    98    TCQ--DCKVQGpN--LWACLEnrCSYVGCGESQV-------DHSTIH 133  

                   yeetgHplavklgtqrv<-*
                   + et H l v+l+t+rv   
    KIAA1097   134 SQETKHYLTVNLTTLRV    150  

SM00695: domain 1 of 2, from 770 to 853: score 67.3, E = 2e-15
                   *->nleegdtewylIskrWyeswedfvehthtcGsaleshcassggsdgk
                       +e +++ +++Is++W++++++f e                      
    KIAA1097   770    IMEPSLL-QFYISRQWLNKFKTFAE---------------------- 793  

                   fPGPIDNsdilcsegdsatansprlkehLvegeDYvlipeelWnkLvrwY
                    PGPI N d+lc +g      +   ++  ++++ +  +p++ W+ L++ Y
    KIAA1097   794 -PGPISNNDFLCIHG------GVPPRKAGYIEDLVLMLPQNIWDNLYSRY 836  

                   GggpgqepipRkvisqg<-*
                   Gggp++++++ +  +q    
    KIAA1097   837 GGGPAVNHLYICHTCQI    853  

SM00695: domain 2 of 2, from 878 to 962: score 127.7, E = 1.3e-33
                   *->nleegdtewylIskrWyeswedfvehthtcGsaleshcassggsdgk
                      ++ +++t +y+Is++W+++we+fv+                 g+dg+
    KIAA1097   878    KEDSPAT-FYCISMQWFREWESFVK-----------------GKDGD 906  

                   fPGPIDNsdilcsegdsatansprlkehLvegeDYvlipeelWnkLvrwY
                   +PGPIDN++i+ +++         ++++L++g+D ++i+ee+Wn+L+++Y
    KIAA1097   907 PPGPIDNTKIAVTKC---------GNVMLRQGADSGQISEETWNFLQSIY 947  

                   GggpgqepipRkvisqg<-*
                   Gggp  e i+R  + ++   
    KIAA1097   948 GGGP--EVILRPPVVHV    962  

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