hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17181348/chunk_1/iprscan-20080501-17181348.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1097 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF00443.19.fs Ubiquitin carboxyl-terminal hydrolase 257.3 1.4e-82 1 PF00443.19.ls Ubiquitin carboxyl-terminal hydrolase 259.0 9.1e-75 1 PF02148.9.fs Zn-finger in ubiquitin-hydrolases and other 36.2 1.6e-09 1 PF02148.9.ls Zn-finger in ubiquitin-hydrolases and other 38.1 2.9e-08 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF02148.9.fs 1/1 99 173 .. 1 82 [] 36.2 1.6e-09 PF02148.9.ls 1/1 99 173 .. 1 82 [] 38.1 2.9e-08 PF00443.19.fs 1/1 220 750 .. 1 318 [] 257.3 1.4e-82 PF00443.19.ls 1/1 220 750 .. 1 318 [] 259.0 9.1e-75 Alignments of top-scoring domains: PF02148.9.fs: domain 1 of 1, from 99 to 173: score 36.2, E = 1.6e-09 *->CvstCgl.tenlWlCLt..CGqvgCGryqylgdGgngHaleHyretg C C+++ nlW CL+++C +vgCG+ +H+ H et KIAA1097 99 C-QDCKVqGPNLWACLEnrCSYVGCGES------QVDHSTIHSQETK 138 HplavklktqstwcyacdaYvhqeddeedalDgkylvd<-* H l v+l+t+++wcyac+ v + ++ + + l KIAA1097 139 HYLTVNLTTLRVWCYACSKEVFLDRKLG--TQPS-LPH 173 PF02148.9.ls: domain 1 of 1, from 99 to 173: score 38.1, E = 2.9e-08 *->CvstCgl.tenlWlCLt..CGqvgCGryqylgdGgngHaleHyretg C C+++ nlW CL+++C +vgCG+ +H+ H et KIAA1097 99 C-QDCKVqGPNLWACLEnrCSYVGCGES------QVDHSTIHSQETK 138 HplavklktqstwcyacdaYvhqeddeedalDgkylvd<-* H l v+l+t+++wcyac+ v + ++ + + l KIAA1097 139 HYLTVNLTTLRVWCYACSKEVFLDRKLG--TQPS-LPH 173 PF00443.19.fs: domain 1 of 1, from 220 to 750: score 257.3, E = 1.4e-82 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl g+tGL+N+GNTCYmN++LQ+L+++ppl+++fl + + KIAA1097 220 RGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLA------RT 260 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++k +++++ +L+ +l+ ++++ +++ ++f + ++ n+ f gy KIAA1097 261 DKKPAICKSYLKLMTELWYKsRPGSVVPTTLF-----QGIKTVNPTFRGY 305 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt QQDA+EFl+ L+d Lhe+l+ KIAA1097 306 SQQDAQEFLRCLMDLLHEELKE---------------------------- 327 RF xxxxxxxxxxxxxxxx rnesiitdlFqGqlks.................................. q + ++++++ +++++ ++++++++ + +++++++++++ KIAA1097 328 ----------QVMEVEedpqtitteetmeedksqsdvdfqscescsnsdr 367 RF .................................................. ++++++++ ++++++++ ++++++++ +++ ++++ +++ ++ ++++ KIAA1097 368 aenengsrcfsednnettmliqddennsemskdwqkekmcnkinkvnseg 417 RF .................................................. + ++++++ +++ + +++++ + + +++ ++ ++ ++++ ++++ +++ KIAA1097 418 efdkdrdsisetvdlnnqetvkvqihsraseyitdvhsndlstpqilpsn 467 RF .................................................. ++ +++ + +++++++ ++ +++++ ++ ++++++++++ ++ ++ KIAA1097 468 egvnprlsasppksgnlwpglapphkkaqsaspkrkkqhkkyrsvisdif 517 RF .................................................. +++ ++ ++ ++++ + + ++ ++ + + +++++ + ++++++++ + KIAA1097 518 dgtiissvqcltcdrvsvtletfqdlslpipgkedlaklhssshptsivk 567 RF .................................................. +++++ +++ + ++ ++ ++ ++ + +++ + KIAA1097 568 agscgeayapqgwiaffmeyvkrfvvscvpswfwgpvvtlqdclaaffar 617 RF xxxxxxxxxxxxxxxxxxxxxxxx ..........................klkikrLPpvLiihLKRFsynget ++ ++++ +++++++ +++ + ++ + +P++L+ihLKRF + KIAA1097 618 delkgdnmyscekckklrngvkfckvQN----FPEILCIHLKRFRHELM- 662 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx glnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeerqrded +++Ki++ V+fPle ++ ++a++ + KIAA1097 663 -FSTKISTHVSFPLEGLDLQPFLAKDSP---------------------- 689 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiayikkkke ++ +Y+L +V++H+G ++ssGHYiay++ ++ KIAA1097 690 -----------------AQIVTYDLLSVICHHG-TASSGHYIAYCR-NNL 720 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ngkWykfDDekVsevteeevlersssAYiLFY<-* n+ Wy fDD++V+ev+e++v + +AY+LFY KIAA1097 721 NNLWYEFDDQSVTEVSESTV--QNAEAYVLFY 750 PF00443.19.ls: domain 1 of 1, from 220 to 750: score 259.0, E = 9.1e-75 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx *->pgptGLvNlGNTCYmNSvLQcLfsipplrdyflsdsyeseinesnpl g+tGL+N+GNTCYmN++LQ+L+++ppl+++fl + + KIAA1097 220 RGLTGLKNIGNTCYMNAALQALSNCPPLTQFFLDCGGLA------RT 260 RF xxxxxxxxxxxxxxxxxxxx xxxxxxxxxxxxxxxxxxxxxxxxxxxxx gskgsllcaladLfnalqsg.yksvapsplkflkqfkltlgkineefsgy ++k +++++ +L+ +l+ ++++ +++ ++f + ++ n+ f gy KIAA1097 261 DKKPAICKSYLKLMTELWYKsRPGSVVPTTLF-----QGIKTVNPTFRGY 305 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx mQQDAhEFllfLLdgLhedlnrvnkkpytepessdkrpdkaaeawknhlt QQDA+EFl+ L+d Lhe+l+ KIAA1097 306 SQQDAQEFLRCLMDLLHEELKE---------------------------- 327 RF xxxxxxxxxxxxxxxx rnesiitdlFqGqlks.................................. q + ++++++ +++++ ++++++++ + +++++++++++ KIAA1097 328 ----------QVMEVEedpqtitteetmeedksqsdvdfqscescsnsdr 367 RF .................................................. ++++++++ ++++++++ ++++++++ +++ ++++ +++ ++ ++++ KIAA1097 368 aenengsrcfsednnettmliqddennsemskdwqkekmcnkinkvnseg 417 RF .................................................. + ++++++ +++ + +++++ + + +++ ++ ++ ++++ ++++ +++ KIAA1097 418 efdkdrdsisetvdlnnqetvkvqihsraseyitdvhsndlstpqilpsn 467 RF .................................................. ++ +++ + +++++++ ++ +++++ ++ ++++++++++ ++ ++ KIAA1097 468 egvnprlsasppksgnlwpglapphkkaqsaspkrkkqhkkyrsvisdif 517 RF .................................................. +++ ++ ++ ++++ + + ++ ++ + + +++++ + ++++++++ + KIAA1097 518 dgtiissvqcltcdrvsvtletfqdlslpipgkedlaklhssshptsivk 567 RF .................................................. +++++ +++ + ++ ++ ++ ++ + +++ + KIAA1097 568 agscgeayapqgwiaffmeyvkrfvvscvpswfwgpvvtlqdclaaffar 617 RF xxxxxxxxxxxxxxxxxxxxxxxx ..........................klkikrLPpvLiihLKRFsynget ++ ++++ +++++++ +++ + ++ + +P++L+ihLKRF + KIAA1097 618 delkgdnmyscekckklrngvkfckvQN----FPEILCIHLKRFRHELM- 662 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx glnkKiddkVefPleLdlssycnaelkekevlrkdekieklkeerqrded +++Ki++ V+fPle ++ ++a++ + KIAA1097 663 -FSTKISTHVSFPLEGLDLQPFLAKDSP---------------------- 689 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx gnneeepeeeedneegenpptkYeLyaVvvHsGsslssGHYiayikkkke ++ +Y+L +V++H+G ++ssGHYiay++ ++ KIAA1097 690 -----------------AQIVTYDLLSVICHHG-TASSGHYIAYCR-NNL 720 RF xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx ngkWykfDDekVsevteeevlersssAYiLFY<-* n+ Wy fDD++V+ev+e++v + +AY+LFY KIAA1097 721 NNLWYEFDDQSVTEVSESTV--QNAEAYVLFY 750 //