Gene/Protein Characteristic Table for KIAA1091
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Product ID ORK02017
Accession No AB029014
Description DENN/MADD domain containing 5A, transcript variant 1
Clone name hk04373
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (4248 bp)
Predicted protein sequence (1359 aa)
Flexi ORF Clone FXC02017
Source Human adult brain
Rouge ID mKIAA1091 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 4248 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq Warning No warning
Integrity of 3' end
Length of 3'UTR 167 bp
Genome contig ID gi51511727r_9017627
PolyA signal sequence
(AATAAA,-24)
+----*----+----*----+----*----+----
AGGATTTTTGGAATAAATAATCTATTTTAGAGTTT
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
ATTTGCTGATTTGCTTTTTACACACTTTCATGTGAAAGAGTGATAGGGAG

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 11 r 9117627 9243409 23 99.8 Perfect prediction
Features of the protein sequence
Description

Length: 1359 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
Q6IQ26 0 100.0 DENN domain-con...
Homo sapiens
CAB55932 0 99.9 hypothetical pr...
Homo sapiens
XP_534048 0 95.7 similar to RAB6...
Canis lupus fam...
XP_508914 0 99.7 RAB6 interactin...
Pan troglodytes
Q6PAL8 0 97.8 DENN domain-con...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB051553 3.6e-07 27.4 KIAA1766
AB007945 3.7e-07 24.2 KIAA0476
AB046828 1.6e-06 30.7 KIAA1608
AB033103 2.3e-05 26.7 KIAA1277
AB002356 2.4e-05 24.4 KIAA0358
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR005113 84 210 PF03456 uDENN
IPR001194 274 462 PF02141 DENN
IPR005112 584 660 PF03455 dDENN
IPR004012 881 1018 PF02759 RUN
IPR001024 1029 1131 PF01477 Lipoxygenase
HMMSmart IPR005113 84 210 SM00800 uDENN
IPR001194 274 462 SM00799 DENN
IPR005112 584 660 SM00801 dDENN
IPR004012 956 1019 SM00593 RUN
IPR004012 1290 1350 SM00593 RUN
ProfileScan IPR005113 84 216 PS50946 uDENN
IPR001194 274 462 PS50211 DENN
IPR005112 584 660 PS50947 dDENN
IPR004012 859 1022 PS50826 RUN
IPR001024 1026 1134 PS50095 Lipoxygenase
IPR004012 1206 1354 PS50826 RUN
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f TTCAACATCACGCTGGAGACG
Primer_r GTCTCCTACTCCTGCACAATC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 11
Experimental conditions
Panel name UniGene
Primer_f -
Primer_r -
PCR product length -
PCR conditions -
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