hmmpfam - search one or more sequences against HMM database HMMER 2.3.2 (Oct 2003) Copyright (C) 1992-2003 HHMI/Washington University School of Medicine Freely distributed under the GNU General Public License (GPL) - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - HMM file: /db/iprscan/data/Pfam.bin Sequence file: /db/iprscan/tmp/20080501/iprscan-20080501-17080478/chunk_1/iprscan-20080501-17080478.nocrc - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - Query sequence: KIAA1091 Accession: [none] Description: [none] Scores for sequence family classification (score includes all domains): Model Description Score E-value N -------- ----------- ----- ------- --- PF02141.11.ls DENN (AEX-3) domain 314.9 1.3e-91 1 PF02141.11.fs DENN (AEX-3) domain 313.1 4.5e-91 1 PF02759.9.fs RUN domain 189.3 4e-54 3 PF02759.9.ls RUN domain 183.7 4.3e-52 1 PF03456.8.fs uDENN domain 136.3 7.8e-38 2 PF03456.8.ls uDENN domain 126.0 9.8e-35 1 PF03455.9.ls dDENN domain 118.2 2.2e-32 1 PF03455.9.fs dDENN domain 116.2 5e-32 1 PF01477.13.fs PLAT/LH2 domain 72.7 4.9e-21 1 PF01477.13.ls PLAT/LH2 domain 74.5 3.1e-19 1 Parsed for domains: Model Domain seq-f seq-t hmm-f hmm-t score E-value -------- ------- ----- ----- ----- ----- ----- ------- PF03456.8.ls 1/1 84 210 .. 1 108 [] 126.0 9.8e-35 PF03456.8.fs 1/2 84 109 .. 1 27 [. 28.9 1.2e-07 PF03456.8.fs 2/2 131 210 .. 25 108 .] 107.4 1.1e-29 PF02141.11.ls 1/1 274 462 .. 1 231 [] 314.9 1.3e-91 PF02141.11.fs 1/1 274 462 .. 1 231 [] 313.1 4.5e-91 PF03455.9.ls 1/1 584 660 .. 1 81 [] 118.2 2.2e-32 PF03455.9.fs 1/1 584 660 .. 1 81 [] 116.2 5e-32 PF02759.9.ls 1/1 881 1018 .. 1 174 [] 183.7 4.3e-52 PF02759.9.fs 2/3 881 1018 .. 1 174 [] 181.8 5.7e-52 PF01477.13.fs 1/1 1029 1131 .. 1 130 [] 72.7 4.9e-21 PF01477.13.ls 1/1 1029 1131 .. 1 130 [] 74.5 3.1e-19 Alignments of top-scoring domains: PF03456.8.ls: domain 1 of 1, from 84 to 210: score 126.0, E = 9.8e-35 *->carLfDyfVvVgldkkpsglgPDela..................... ++r++DyfV++gld+++ gl+PDel+ + + ++ +++ ++ ++ KIAA1091 84 PSRFADYFVICGLDTET-GLEPDELSalcqyiqaskardgaspfiss 129 ...gdneylPellrqFPSKllahykedhedepfdlksipkFCfPegldsv +++g+n+++ +l+r+F+SK+la y+e++e++pfd++++ ++C+P+gl + KIAA1091 130 tteGENFEQTPLRRTFKSKVLARYPENVEWNPFDQDAVGMLCMPKGLAFK 179 svrevnalrdpqfFsFvLTdeDskRtryGfCltfy<-* +++++ r+pqf+ F++T+eD++R ++Gf ltfy KIAA1091 180 TQADP---REPQFHAFIITREDGSR-TFGFALTFY 210 PF03456.8.fs: domain 1 of 2, from 84 to 109: score 28.9, E = 1.2e-07 *->carLfDyfVvVgldkkpsglgPDelag<-* ++r++DyfV++gld+++ gl+PDel++ KIAA1091 84 PSRFADYFVICGLDTET-GLEPDELSA 109 PF03456.8.fs: domain 2 of 2, from 131 to 210: score 107.4, E = 1.1e-29 *->lagdneylPellrqFPSKllahykedhedepfdlksipkFCfPegld + g+n+++ +l+r+F+SK+la y+e++e++pfd++++ ++C+P+gl KIAA1091 131 TEGENFEQTPLRRTFKSKVLARYPENVEWNPFDQDAVGMLCMPKGLA 177 svsvrevnalrdpqfFsFvLTdeDskRtryGfCltfy<-* + +++++ r+pqf+ F++T+eD++R ++Gf ltfy KIAA1091 178 FKTQADP---REPQFHAFIITREDGSR-TFGFALTFY 210 PF02141.11.ls: domain 1 of 1, from 274 to 462: score 314.9, E = 1.3e-91 *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk +v k+iCli++++f++a+r vL++l++ ++s+q+++lp KIAA1091 274 YVSKCICLITPMSFMKACRSVLQQLHQAVTSPQPPPLP--------- 311 srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg lEs+i+n+lyevplP+pG++++++++++ KIAA1091 312 ---------------------LESYIYNVLYEVPLPPPGRSLKFSGVYG- 339 agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl +i++++p +++lpl+df+++e+Fe+LGvenv+qLf++aLl KIAA1091 340 ----------PIICQRPSTNELPLFDFPVKEVFELLGVENVFQLFTCALL 379 ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc E++iL++S++++rL++++++++aL++P++Wqh+y+P+LPasLl ++L+ KIAA1091 380 EFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLL---HFLD 426 APtPFlIGVhssffelvkdlplei..dvvvVDLDtn<-* AP+P+l+G+hs+ ++++ +l+l+++ ++++VD+D++ KIAA1091 427 APVPYLMGLHSNGLDDRSKLELPQeaNLCFVDIDNH 462 PF02141.11.fs: domain 1 of 1, from 274 to 462: score 313.1, E = 4.5e-91 *->rvpksiCliSrlpffeaFrkvLlelkrvldssqasslppssglksgk +v k+iCli++++f++a+r vL++l++ ++s+q+++lp KIAA1091 274 YVSKCICLITPMSFMKACRSVLQQLHQAVTSPQPPPLP--------- 311 srdtvwrvltgvlevLhdirElEslirnLlyevplPapGktirvkvfvlg lEs+i+n+lyevplP+pG++++++++++ KIAA1091 312 ---------------------LESYIYNVLYEVPLPPPGRSLKFSGVYG- 339 agvkHyrplelilfplpdplplpledfdlaelFeaLGvenvlqLfaaaLl +i++++p +++lpl+df+++e+Fe+LGvenv+qLf++aLl KIAA1091 340 ----------PIICQRPSTNELPLFDFPVKEVFELLGVENVFQLFTCALL 379 ErkiLflSsklsrLsscchAlvaLLYPleWqhpyIPvLPasLlsAEdvLc E++iL++S++++rL++++++++aL++P++Wqh+y+P+LPasLl ++L+ KIAA1091 380 EFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLL---HFLD 426 APtPFlIGVhssffelvkdlplei..dvvvVDLDtn<-* AP+P+l+G+hs+ ++++ +l+l+++ ++++VD+D++ KIAA1091 427 APVPYLMGLHSNGLDDRSKLELPQeaNLCFVDIDNH 462 PF03455.9.ls: domain 1 of 1, from 584 to 660: score 118.2, E = 2.2e-32 *->lddqvreaFLrfFNasllggYrnfLryprkape.wegardevvtFqk l+ q+re+F ++F +++++Y++f+++p++++e+w+++r+++++F+k KIAA1091 584 LNIQIREVFANRF-TQMFADYEVFVIQPSQDKEsWFTNREQMQNFDK 629 eaFLksrprssqraFlsrlletQAVemFaeFIeeR<-* ++FL+++p+ ++ +Flsr+letQ mFa+FI+++ KIAA1091 630 ASFLSDQPEPYL-PFLSRFLETQ---MFASFIDNK 660 PF03455.9.fs: domain 1 of 1, from 584 to 660: score 116.2, E = 5e-32 *->lddqvreaFLrfFNasllggYrnfLryprkape.wegardevvtFqk l+ q+re+F ++F +++++Y++f+++p++++e+w+++r+++++F+k KIAA1091 584 LNIQIREVFANRF-TQMFADYEVFVIQPSQDKEsWFTNREQMQNFDK 629 eaFLksrprssqraFlsrlletQAVemFaeFIeeR<-* ++FL+++p+ ++ +Flsr+letQ mFa+FI+++ KIAA1091 630 ASFLSDQPEPYL-PFLSRFLETQ---MFASFIDNK 660 PF02759.9.ls: domain 1 of 1, from 881 to 1018: score 183.7, E = 4.3e-52 *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls + +++++Al+sH+L+++ +++++k ++++ls KIAA1091 881 QVKQGKSALWSHLLHYQ-----------------DNRQRKLTSGSLS 910 sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi +s++llds+r++ +d+s +++p++ sl +++++i++++e i KIAA1091 911 TSGILLDSERRK------SDASSLMPPLRISLIQDMRHIQNIGE-----I 949 ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS kt+vg+ R AW+Rl++++k+Ls++lk+Llsd+el++k+Yk++A+Lr++ KIAA1091 950 KTDVGKAR--AWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCD- 996 deegCeillslLqgLsaldFsLdlkfe<-* +e+ e++l++L +++a+d++ +f+ KIAA1091 997 -DEK-EQFLYHLLSFNAVDYF---CFT 1018 PF02759.9.fs: domain 2 of 3, from 881 to 1018: score 181.8, E = 5.7e-52 *->tLCpaleAllsHGLkrpelltgaihpwafiedaaagefekaalsvls + +++++Al+sH+L+++ +++++k ++++ls KIAA1091 881 QVKQGKSALWSHLLHYQ-----------------DNRQRKLTSGSLS 910 sssllldsqrslgcdtnnldpsfkvlpvaeslkhivsqieqLaeKrSsvi +s++llds+r++ +d+s +++p++ sl +++++i++++e i KIAA1091 911 TSGILLDSERRK------SDASSLMPPLRISLIQDMRHIQNIGE-----I 949 ktavgrgRKyAWiRlaLneksLssylklLlsdeellrkyYkpnAlLrdpS kt+vg+ R AW+Rl++++k+Ls++lk+Llsd+el++k+Yk++A+Lr++ KIAA1091 950 KTDVGKAR--AWVRLSMEKKLLSRHLKQLLSDHELTKKLYKRYAFLRCD- 996 deegCeillslLqgLsaldFsLdlkfe<-* +e+ e++l++L +++a+d++ +f+ KIAA1091 997 -DEK-EQFLYHLLSFNAVDYF---CFT 1018 PF01477.13.fs: domain 1 of 1, from 1029 to 1131: score 72.7, E = 4.9e-21 *->vsyqlivatggdstgagttgkvgislyGengeseqipldkgelkslp +++ + ++ +g g++ t++ +i++ Ge ge+ KIAA1091 1029 HILIVPSKKLG---GSMFTANPWICISGELGET-------------- 1058 tlgagpgstfsftfdvdedlGelgavkiknehsglnswsptspewflksi ++++ p ++ ++tf++ ++lG l v+i +++sgl++ +w ++++ KIAA1091 1059 QIMQIPRNVLEMTFEC-QNLGKLTTVQIGHDNSGLYA------KWLVEYV 1101 tvedgptqgkvhFpCnsWvypakgdeylslrif<-* +v++ t+++++FpC +W+ + ++ sl+ KIAA1091 1102 MVRNEITGHTYKFPCGRWLGKG--MDDGSLE-R 1131 PF01477.13.ls: domain 1 of 1, from 1029 to 1131: score 74.5, E = 3.1e-19 *->vsyqlivatggdstgagttgkvgislyGengeseqipldkgelkslp +++ + ++ +g g++ t++ +i++ Ge ge+ KIAA1091 1029 HILIVPSKKLG---GSMFTANPWICISGELGET-------------- 1058 tlgagpgstfsftfdvdedlGelgavkiknehsglnswsptspewflksi ++++ p ++ ++tf++ ++lG l v+i +++sgl++ +w ++++ KIAA1091 1059 QIMQIPRNVLEMTFEC-QNLGKLTTVQIGHDNSGLYA------KWLVEYV 1101 tvedgptqgkvhFpCnsWvypakgdeylslrif<-* +v++ t+++++FpC +W+ + ++ sl+ KIAA1091 1102 MVRNEITGHTYKFPCGRWLGKG--MDDGSLE-R 1131 //