# /usr/local/bin/fasta34 -b50 -d10 -E0.01 -H -O./tmp/hk04373.fasta.huge -Q ../query/KIAA1091.ptfa ./tmplib.24314 2 FASTA searches a protein or DNA sequence data bank version 34.26.5 April 26, 2007 Please cite: W.R. Pearson & D.J. Lipman PNAS (1988) 85:2444-2448 KIAA1091, 1359 aa vs ./tmplib.24314 library 1986146 residues in 2037 sequences Expectation_n fit: rho(ln(x))= 6.0364+/-0.00789; mu= 16.5522+/- 0.538 mean_var=227.2384+/-54.746, 0's: 0 Z-trim: 9 B-trim: 3 in 1/39 Lambda= 0.085081 FASTA (3.5 Sept 2006) function [optimized, BL50 matrix (15:-5)] ktup: 2 join: 40, opt: 28, open/ext: -10/-2, width: 16 The best scores are: opt bits E(2037) KIAA1766 ( 1123 res) fj16085(revised) (1123) 316 52.9 3.6e-07 KIAA0476 ( 1626 res) ah04654 (1626) 318 53.4 3.7e-07 KIAA1608 ( 872 res) fj20142 ( 872) 297 50.4 1.6e-06 KIAA1277 ( 1039 res) fj11251 (1039) 267 46.9 2.3e-05 KIAA0358 ( 1584 res) hh00017 (1584) 269 47.4 2.4e-05 KIAA0870 ( 1019 res) hk06970(revised) (1019) 254 45.2 6.8e-05 >>KIAA1766 ( 1123 res) fj16085(revised) (1123 aa) initn: 270 init1: 270 opt: 316 Z-score: 220.5 bits: 52.9 E(): 3.6e-07 Smith-Waterman score: 352; 27.410% identity (56.024% similar) in 332 aa overlap (152-477:1-286) 130 140 150 160 170 KIAA10 GASPFISSTTEGENFEQTPLRRTFKSKVLARYPENVEWN--PFDQDAVGMLCMPKGLAFK :.:.. .:. :: : .. ..:.: : .. KIAA17 RFPQK-DWDDTPFPQ-GIELFCQPGG--WQ 10 20 180 190 200 210 220 230 KIAA10 TQADPREPQFHAFIITREDGSRTFGFALTFYEEVTSKQICSAMQTLYHMHNAEYDVLHAP . . ..: : . ..: :..: . ::::: :: .. KIAA17 LSRERKQPTFFVVVLTDIDSDRHYCSCLTFYE-------------------AEINL---- 30 40 50 60 240 250 260 270 280 290 KIAA10 PADDRDQSSMEDGEDTPVTKLQRFNSYDISRDTLYVSKCICLITPMSFMKACRSVLQQLH . . .: :: . :. : :. ... : . :.. . . . :. : .. KIAA17 --QGTKKEEIE-GE-AKVSGL-------IQPAEVFAPKSLVLVSRLYYPEIFRACLGLIY 70 80 90 100 110 300 310 320 330 340 350 KIAA10 QAVTSPQPPPLPLESYIYNVLYEVPLPPPGRSLK-FS-GVYGPIICQRPSTNELPLFDFP . .. . ::: : : : .: : : : :: :. . : : . ::. KIAA17 TVYVDSL--NVSLESLIAN-LCACLVPAAGGSQKLFSLGAGDRQLIQTPLHDSLPITGTS 120 130 140 150 160 360 370 380 390 400 410 KIAA10 VKEVFELLGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPIL : .:. ::..::..:: .: : ..:..: .::: . ... .::::..... :.::: KIAA17 VALLFQQLGIQNVLSLFCAVLTENKVLFHSASFQRLSDACRALESLMFPLKYSYPYIPIL 170 180 190 200 210 220 420 430 440 450 460 470 KIAA10 PASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFIELPE--DLPQFPN ::.::. :..:.:...:.:: : .: .. ..:.:. :..:: : ..:. KIAA17 PAQLLEVLSSPTPFIIGVHSVFKTDVHEL-----LDVIIADLDGGTIKIPECIHLSSLPE 230 240 250 260 270 280 480 490 500 510 520 530 KIAA10 KLEFVQEVSEILMAFGIPPEGNLHCSESASKLKRLRASELVSDKRNGNIAGSPLHSYELL : KIAA17 PLLHQTQSALSLILHPDLEVADHAFPPPRTALSHSKMLDKEVRAVFLRLFAQLFQGYRSC 290 300 310 320 330 340 >>KIAA0476 ( 1626 res) ah04654 (1626 aa) initn: 335 init1: 207 opt: 318 Z-score: 220.4 bits: 53.4 E(): 3.7e-07 Smith-Waterman score: 372; 24.190% identity (53.905% similar) in 525 aa overlap (145-642:341-822) 120 130 140 150 160 170 KIAA10 QASKARDGASPFISSTTEGENFEQTPLRRTFKSKVLARYPE-NVEWNPFDQDAVGMLCMP .....:.:::: . : :. . .: ..:.: KIAA04 RLPRNLNPGMWGPAVYLCYKVGLAKANTLVYEAELLGRYPEEDNEAFPLPE-SVPVFCLP 320 330 340 350 360 180 190 200 210 220 230 KIAA10 KGLAFK---TQADPREPQFHAFIITREDGSRTFGFALTFYEEVTSKQICSAMQTLYHMHN : ... .:. : : .:..: :....: :: ::: KIAA04 MGATIECWPAQTKYPVPVFSTFVLTGAAGDKVYGAALQFYEAF----------------- 370 380 390 400 410 240 250 260 270 280 KIAA10 AEYDVLHAPPADDRDQSSMEDGEDTPVTKLQRFNSYDI-SRDTLYVSKCICLITPMSFMK : : .... : . : . . ... . :: . : ... . KIAA04 --------PRARLSERQARALGLLSAVERGRALGGRAVRSR------RAIAVLSRWPAFP 420 430 440 450 290 300 310 320 330 340 KIAA10 ACRSVLQQLHQAVTSPQPPPLPLESYIYNVLYEVPLPPPGRS---LKFSGVYGPIICQRP : :. : :.. .: : ::::..: . ...::.: : : ...: . ..:: : KIAA04 AFRAFLTFLYRYSVSG-PHRLPLEAHISHFIHNVPFPSPQRPRILVQMSPYDNLLLCQ-P 460 470 480 490 500 510 350 360 370 380 390 400 KIAA10 STNELPLFDFPVKEVFELLGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFP .. ::: .... :: : .. :. .: : ..:..: . . : .: :......:: KIAA04 VSSPLPLSGASFLQLLQSLGPELAITLLLAVLTEHKLLVHSLRPDLLTSVCEALVSMIFP 520 530 540 550 560 570 410 420 430 440 450 460 KIAA10 FQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFI-- ..:: :.:. : : :.::::...:.::. .: :. : .: ::.:.. . KIAA04 LHWQCPYIPLCPLVLADVLSAPVPFIVGIHSSYFD----LHDPPADVIC-VDLDTNTLFQ 580 590 600 610 620 630 470 480 490 500 510 KIAA10 ----EL--PEDLPQFPNKLEFVQEVSEILMAFGIPPEGNLHCSESASKLKRLRASELVSD .: :. ::. : :. .. .... . . : : :: : : : KIAA04 TEEKKLLSPRTLPRRPYKV-LLATLTNLYQQLDQTYTGP---EEEASLEFLLTDYEAVCG 640 650 660 670 680 520 530 540 550 560 570 KIAA10 KR---NGNIAGSPLHSYE-LLKENETIARLQALVKRTGV-SLEKLEVREDPSSNKDLKVQ .: . .. :. :. . ::: ... : . . :. ....: . .... . . KIAA04 RRARLEREVQGAFLRFMACLLKGYRVFLRPLTQAPSEGARDVDNLFFLQGFLKSRERSSH 690 700 710 720 730 740 580 590 600 610 620 KIAA10 CDEEELRIYQLNIQIRE--VFAN-RFTQM-FADYEVFVIQPSQDKE--SWFTNREQMQNF .: :. :. : :.. : . . : : : ..: :.: . ... :.... KIAA04 KLYSQLLHTQMFSQFIEECSFGSARHAALEFFDSCVEKVHPEQEKPEPTPLVELEELSGS 750 760 770 780 790 800 630 640 650 660 670 680 KIAA10 DKASFLSDQPEPYLPFLSRFLETQMFASFIDNKIMCHDDDDKDPVLRVFDSRVDKIRLLN . . :.. :: :: KIAA04 ELTVFITPPEEPALPEGSESTPQYCYDGFPELRAELFESLQEQPGALPVPGPSRSAPSSP 810 820 830 840 850 860 >>KIAA1608 ( 872 res) fj20142 (872 aa) initn: 144 init1: 144 opt: 297 Z-score: 208.9 bits: 50.4 E(): 1.6e-06 Smith-Waterman score: 297; 30.675% identity (66.871% similar) in 163 aa overlap (316-475:29-185) 290 300 310 320 330 340 KIAA10 SFMKACRSVLQQLHQAVTSPQPPPLPLESYIYNVLYEVPLPPPGRSLKFSGVYGPIICQR . ..:...:.: :: :...: :.. . KIAA16 QQTEIRVLPLIFRSEELLLYLKENQWNELLETLHKLPIPDPGVSVHLS-VHSYFTV-- 10 20 30 40 50 350 360 370 380 390 400 KIAA10 PSTNELPLF--DFPVKEVFELLGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITAL :.: ::: . . . : : . :.:...:.. : : .::. .. . : . . .:. KIAA16 PDTRELPSIPENRNLTEYFVAVDVNNMLHLYASMLYERRILIICSKLSTLTACIHGSAAM 60 70 80 90 100 110 410 420 430 440 450 460 KIAA10 MFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHF ..:. :::::.:.:: :: . ::.:::.:.: . .. .. : .. ....:.. KIAA16 LYPMYWQHVYIPVLPPHLLDYCCAPMPYLIGIHLSLMEKVRNMALD---DVVILNVDTNT 120 130 140 150 160 170 470 480 490 500 510 520 KIAA10 IELP-EDLPQFPNKLEFVQEVSEILMAFGIPPEGNLHCSESASKLKRLRASELVSDKRNG .: : .:: ..:: KIAA16 LETPFDDLQSLPNDVISSLKNRLKKVSTTTGDGVARAFLKAQAAFFGSYRNALKIEPKGS 180 190 200 210 220 230 >>KIAA1277 ( 1039 res) fj11251 (1039 aa) initn: 290 init1: 198 opt: 267 Z-score: 188.3 bits: 46.9 E(): 2.3e-05 Smith-Waterman score: 267; 26.667% identity (61.905% similar) in 210 aa overlap (280-482:696-896) 250 260 270 280 290 300 KIAA10 EDGEDTPVTKLQRFNSYDISRDTLYVSKCICLITPMSFMKACRSVLQQLHQAVTSPQPPP :... .. : :..... . : . . KIAA12 VLTGEDGSRRFGYCRRLLPGGKGKRLPEVYCIVSRLG----CFSLFSRILDEVEKRRGIS 670 680 690 700 710 720 310 320 330 340 350 360 KIAA10 LPLESYIYNVLYEVPLPPPGRSL---KF---SGVYGPIICQRPSTNELPLFDFPVKEVFE : . .. ..:.:.: :... .: ::. .: :: ..: :: . .: KIAA12 PALVQPLMRSVMEAPFPALGKTILVKNFLPGSGTEVIELC-RPLDSRLEHVDF--ESLFS 730 740 750 760 770 370 380 390 400 410 420 KIAA10 LLGVENVFQLFTCALLEFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLH :.:... .:. ::: .... ... . : ....::..:: :::.:.:.:: ... KIAA12 SLSVRHLVCVFASLLLERRVIFIADKLSILSKCCHAMVALIYPFAWQHTYIPVLPPAMVD 780 790 800 810 820 830 430 440 450 460 470 480 KIAA10 FLDAPVPYLMGLHSNGLDDRSKLELPQEANLCFVDIDNHFIELPEDLPQ-FPNKLEFVQE .. .:.:.:.:: :..: ::: : : ....:.. .: . .: ::. : : KIAA12 IVCSPTPFLIGLLSSSLPLLR--ELPLEEVLVVDLVNSRFLRQMDDEDSILPRKLQVVLE 840 850 860 870 880 890 490 500 510 520 530 540 KIAA10 VSEILMAFGIPPEGNLHCSESASKLKRLRASELVSDKRNGNIAGSPLHSYELLKENETIA KIAA12 HILEQRNELACEQDEGPLDGRHGPESSPLNEVVSEAFVRFFVEIVGHYSLFLTSGEREER 900 910 920 930 940 950 >>KIAA0358 ( 1584 res) hh00017 (1584 aa) initn: 236 init1: 170 opt: 269 Z-score: 188.0 bits: 47.4 E(): 2.4e-05 Smith-Waterman score: 269; 24.438% identity (56.742% similar) in 356 aa overlap (312-640:250-586) 290 300 310 320 330 KIAA10 ITPMSFMKACRSVLQQLHQAVTSPQPPPLPLESYIYNVLYEVPLPPPGRS-----LKFSG .:..:: .: . :.: :.. . . KIAA03 GVQRDTMWRIFTGSLLVEEKSSALLHDLREIEAWIYRLL-RSPVPVSGQKRVDIEVLPQE 220 230 240 250 260 270 340 350 360 370 380 390 KIAA10 VYGPIICQRPSTNELPLFDFPVKEVFELLGVENVFQLFTCALLEFQILLYSQHYQRLMTV . . :. ... : :::.. .:::::. .:..:: ::: ...: :. :. : KIAA03 LQPALTFALPDPSRFTLVDFPLHLPLELLGVDACLQVLTCILLEHKVVLQSRDYNALSMS 280 290 300 310 320 330 400 410 420 430 440 450 KIAA10 AETITALMFPFQWQHVYVPILP---ASLLHFLDAPVPYLMGLHSNGLDDRSKLELPQEAN . ...:...:.... .:.:: :: ..: ::.::..:. .. . . ...:... KIAA03 VMAFVAMIYPLEYMFPVIPLLPTCMASAEQLLLAPTPYIIGVPASFFLYKLDFKMPDDVW 340 350 360 370 380 390 460 470 480 490 500 KIAA10 LCFVDIDNHFIELP---EDLPQFPN--KLEFVQEVSEIL--MAFGIPPEGNLHCSESASK : ::.:.. . : : :: .:. .::. ..... : :... : ::. : KIAA03 L--VDLDSNRVIAPTNAEVLPILPEPESLELKKHLKQALASMSLNTQPILNLE------K 400 410 420 430 440 450 510 520 530 540 550 560 KIAA10 LKRLRASELVSDKRNGNIAGSPLHSYE-LLKENETIARLQALVKRTGVSLEKLEVREDPS ... . :. . .... ..: .. :. :. : . :. . :: : KIAA03 FHEGQEIPLLLGRPSNDLQSTPSTEFNPLIYGND--------VDSVDVATRVAMVRFFNS 460 470 480 490 500 570 580 590 600 610 620 KIAA10 SNKDLKVQCDEEELRIYQ---LNIQIREVFANRFTQM-FADYEVFVIQPSQDKESWFTNR .: : . ::.. . .: .:.: : ::. .. : . :. : KIAA03 ANVLQGFQMHTRTLRLFPRPVVAFQAGSFLASRPRQTPFAE-KLARTQAVEYFGEWILNP 510 520 530 540 550 560 630 640 650 660 670 KIAA10 -----EQMQN--FDKASFLSDQPEPYLPFLSRFLETQMFASFIDNKIMCHDDDDKDPVLR ....: :: : ...:.:. : KIAA03 TNYAFQRIHNNMFDPA-LIGDKPKWYAHQLQPIHYRVYDSNSQLAEALSVPPERDSDSEP 570 580 590 600 610 620 >>KIAA0870 ( 1019 res) hk06970(revised) (1019 aa) initn: 223 init1: 223 opt: 254 Z-score: 179.8 bits: 45.2 E(): 6.8e-05 Smith-Waterman score: 254; 31.034% identity (60.920% similar) in 174 aa overlap (350-512:4-166) 320 330 340 350 360 370 KIAA10 LYEVPLPPPGRSLKFSGVYGPIICQRPSTNELPLFDFPVKEVFELLGVENVFQLFTCALL : :..:. .. . . :.:.:..:: : KIAA08 ADPESPILDLDLHLPLLCFRPEKVLQILTCILT 10 20 30 380 390 400 410 420 430 KIAA10 EFQILLYSQHYQRLMTVAETITALMFPFQWQHVYVPILPASLLHFLDAPVPYLMGLHSNG : .:...:. . : :.: . : ..:.:::: .:::: ..: :. ::. .::: : . KIAA08 EQRIVFFSSDWALLTLVTECFMAYLYPLQWQHPFVPILSDQMLDFVMAPTSFLMGCHLDH 40 50 60 70 80 90 440 450 460 470 480 490 KIAA10 LDDRSKLELPQEAN-LCFVDIDNHFIELPE------DLPQFP--NKLEFVQEVSEILMAF ... :: ::. : ...::. : . :.:. : :.:.:. . . KIAA08 FEEVSK-----EADGLVLINIDHGSITYSKSTDDNVDIPDVPLLAAQTFIQRVQSLQL-- 100 110 120 130 140 500 510 520 530 540 KIAA10 GIPPEGNLHCSE--SASKLKRLRASELVSDKRNGNIAGSPLHSYELLKENETIARLQALV . .:: .. :.. ::. :: KIAA08 ----HHELHAAHLLSSTDLKEGRAHRRSWQQKLNCQIQQTTLQLLVSIFRDVKNHLNYEH 150 160 170 180 190 200 1359 residues in 1 query sequences 1986146 residues in 2037 library sequences Scomplib [34.26] start: Thu Dec 18 15:08:47 2008 done: Thu Dec 18 15:08:48 2008 Total Scan time: 0.770 Total Display time: 0.210 Function used was FASTA [version 34.26.5 April 26, 2007]