Gene/Protein Characteristic Table for KIAA0940
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Product ID ORK00691
Accession No AB023157
Description cytoplasmic polyadenylation element binding protein 3, transcript variant 2
Clone name hh04894
Vector information
The cDNA fragment was inserted at the SalI-NotI site of the ...
cDNA sequence DNA sequence (5715 bp)
Predicted protein sequence (699 aa)
Flexi ORF Clone FXC00691
Source Human adult brain
Rouge ID mKIAA0940 by Kazusa Mouse cDNA Project
Features of the cloned cDNA sequence
Description

Length: 5715 bp
Physical map
Restriction map
Prediction of protein coding region (GeneMark analysis).

N-terminal truncation Coding interruption
cloned DNA seq No warning No warning
Integrity of 3' end
Length of 3'UTR 3571 bp
Genome contig ID gi89161187r_93698379
PolyA signal sequence
(AATAAA,-22)
+----*----+----*----+----*----+----
TGGATAATTGGGTAATAAAATGACAGAATGAGCAG
Flanking genome sequence
(100000 - 99951)
----+----*----+----*----+----*----+----*----+----*
AACATGTGAGATTTTGAGAAGCCTTTTCCTTTATCACAGTGGTTTAGTGT

Ensembl ContigView (Add our DAS server as a DAS source)


Chr f/r start end exon identity class
Ensembl gnome browser 10 r 93798379 93992983 10 99.3 Perfect prediction
Features of the protein sequence
Description

Length: 699 aa
Result of homology search against nr database (FASTA output, Multiple alignment)
Entry Exp ID% Protein Source
CAI13637 4e-185 100.0 cytoplasmic pol...
Homo sapiens
XP_001145214 1.2e-184 99.9 cytoplasmic pol...
Pan troglodytes
XP_001088983 7.9e-183 98.8 similar to cyto...
Macaca mulatta
XP_543930 7.4e-181 97.7 similar to cyto...
Canis lupus fam...
BAE36436 1.8e-138 94.7 unnamed protein...
Mus musculus
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of homology search against HUGE database (FASTA output, Multiple alignment)
Entry Exp ID% HUGE_ID
AB051460 4.8e-38 59.9 KIAA1673
The numbers on the left and right sides of a black line in the graphical overview indicate the lengths (in amino acid residues) of the non-homologous N-terminal and C-terminal portions flanking the homologous region (indicated by the black line), respectively.
Result of motif / domain search (InterProScan and SOSUI)

Result of InterProScan

Search method interpro_ID From To Entry Definition
HMMPfam IPR000504 444 505 PF00076 RNA recognition motif
HMMSmart IPR000504 443 515 SM00360 RNA recognition motif
IPR000504 551 624 SM00360 RNA recognition motif
ProfileScan IPR000504 442 529 PS50102 RNA recognition motif
IPR000504 550 628 PS50102 RNA recognition motif
Expression profile
Description

RT-PCR-ELISA
Experimental conditions
Primer_f GCATAAAGCTAAAGTGAAGGC
Primer_r TCAGTCGCGCACAATCAACAC
PCR conditions 95 °C30 sec55 °C30 sec72 °C60 sec30 cycles

RH mapping information
Description

Chromosome No. 10
Experimental conditions
Panel name GeneBridge 4
Primer_f GCATAAAGCTAAAGTGAAGGC
Primer_r TCAGTCGCGCACAATCAACAC
PCR product length 153 bp
PCR conditions 95 °C15 sec62 °C60 sec30 cycles
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