hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/Pfam.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17240280/chunk_1/iprscan-20080502-17240280.nocrc
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Query sequence: KIAA0940
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
PF00076.12.fs RNA recognition motif. (a.k.a. RRM, RBD, or     37.7    7.9e-10   2
PF00076.12.ls RNA recognition motif. (a.k.a. RRM, RBD, or     36.2    1.1e-07   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
PF00076.12.fs   1/2     444   505 ..     1    62 [.    30.5  8.7e-08
PF00076.12.ls   1/2     444   517 ..     1    74 []    27.3  5.1e-05

Alignments of top-scoring domains:
PF00076.12.fs: domain 1 of 2, from 444 to 505: score 30.5, E = 8.7e-08
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrD.ttretgrskGfaF
                      +fVg+Lppd++e+++ + F+ fGp   ++ +++ ++++   +kG+aF
    KIAA0940   444    VFVGGLPPDIDEDEITASFRRFGPL-VVDWPHKaESKSYFPPKGYAF 489  

                   VeFedeedAekAldal<-*
                     F+ e+++++ +da+   
    KIAA0940   490 LLFQEESSVQALIDAC    505  

PF00076.12.ls: domain 1 of 2, from 444 to 517: score 27.3, E = 5.1e-05
                   *->lfVgNLppdtteedLkdlFskfGpiesikivrD.ttretgrskGfaF
                      +fVg+Lppd++e+++ + F+ fGp   ++ +++ ++++   +kG+aF
    KIAA0940   444    VFVGGLPPDIDEDEITASFRRFGPL-VVDWPHKaESKSYFPPKGYAF 489  

                   VeFedeedAekAldalnGkelggrelrv<-*
                     F+ e+++++ +da+ +   +   +     
    KIAA0940   490 LLFQEESSVQALIDACLEEDGKLYLCVS    517  

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