hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
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HMM file:                 /db/iprscan/data/smart.HMMs.bin
Sequence file:            /db/iprscan/tmp/20080502/iprscan-20080502-17240280/chunk_1/iprscan-20080502-17240280.nocrc
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Query sequence: KIAA0940
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
SM00360                                                  57.6    1.6e-12   2

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
SM00360    1/2     443   515 ..     1   121 []    33.8  2.3e-05
SM00360    2/2     551   624 ..     1   121 []    23.8    0.012

Alignments of top-scoring domains:
SM00360: domain 1 of 2, from 443 to 515: score 33.8, E = 2.3e-05
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      ++fVg+L  ppd++e+++   F              ++fG++v v+ 
    KIAA0940   443    KVFVGGL--PPDIDEDEITASF--------------RRFGPLV-VDW 472  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                   +++ +++++ +                  +kG+aF  F +e+++++ +  
    KIAA0940   473 PHKAESKSYFP------------------PKGYAFLLFQEESSVQALI-D 503  

                   ealnaskGkeledgGrptlglrVe<-*
                   ++l          ++ +   l++    
    KIAA0940   504 ACLE---------EDGK---LYLC    515  

SM00360: domain 2 of 2, from 551 to 624: score 23.8, E = 0.012
                   *->tlfVgNLndppdvteedLrelFkevksvevfraeteskfGkvvsvri
                      t+fVg++  p      +L  +              ++ +G v ++ i
    KIAA0940   551    TIFVGGV--PRPLRAVELAMIM-------------DRLYGGVCYAGI 582  

                   vrdkdnilirressleqkvqlgkdsgTGkskGfaFVeFedeedAekAlli
                    +d++                      + +kG + V F+++++  +A  i
    KIAA0940   583 DTDPE---------------------LKYPKGAGRVAFSNQQSYIAA--I 609  

                   ealnaskGkeledgGrptlglrVe<-*
                   +a       +l  + +    +  +   
    KIAA0940   610 SARF----VQL--QHND---IDKR    624  

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